Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 1.5e-100 370.2 287 100.0
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 7.7e-33 145.2 136 62.5
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 5.4e-26 122.5 131 52.7
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 5.4e-26 122.5 139 48.2
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 9.1e-26 121.7 133 51.1
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 7.7e-25 118.6 127 52.8
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 1.7e-24 117.5 131 51.1
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 6.6e-24 115.5 128 49.2
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 6.6e-24 115.5 140 48.6
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 3.3e-23 113.2 145 45.5
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 3.3e-23 113.2 140 49.3
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 4.2e-23 112.8 131 48.9
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 9.5e-23 111.7 132 48.5
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 1.2e-22 111.3 131 48.9
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 2.8e-22 110.2 131 45.8
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 2.8e-22 110.2 132 47.0
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 4.7e-22 109.4 134 47.8
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 1.0e-21 108.2 134 47.0
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 1.8e-21 107.5 132 46.2
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 1.8e-21 107.5 133 45.9
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 1.8e-21 107.5 128 50.0
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 3.0e-21 106.7 62 82.3
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 3.0e-21 106.7 129 48.8
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 8.9e-21 105.1 132 44.7
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 2.0e-20 104.0 158 38.6
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 2.0e-20 104.0 132 44.7
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 3.4e-20 103.2 132 43.9
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 4.4e-20 102.8 131 42.0
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 9.8e-20 101.7 138 44.9
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 1.7e-19 100.9 131 42.7
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 2.8e-19 100.1 138 44.2
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 2.8e-19 100.1 132 43.2
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 4.9e-19 99.4 132 41.7
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 6.3e-19 99.0 155 40.6
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 8.3e-19 98.6 136 41.9
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 8.3e-19 98.6 132 42.4
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 1.1e-18 98.2 132 40.9
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.1e-18 98.2 132 40.9
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 1.1e-18 98.2 61 70.5
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 1.8e-18 97.4 138 40.6
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 1.8e-18 97.4 132 41.7
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 1.8e-18 97.4 132 41.7
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 1.8e-18 97.4 137 43.1
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 1.8e-18 97.4 136 39.7
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.4e-18 97.1 129 41.9
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 2.4e-18 97.1 138 42.8
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 3.2e-18 96.7 138 42.8
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 3.2e-18 96.7 137 40.1
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 5.4e-18 95.9 128 43.0
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 1.2e-17 94.7 139 43.9
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 1.2e-17 94.7 132 40.9
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 1.6e-17 94.4 136 43.4
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.0e-17 94.0 132 39.4
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 2.7e-17 93.6 136 39.0
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 5.9e-17 92.4 132 39.4
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 5.9e-17 92.4 137 40.1
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 1.3e-16 91.3 140 42.1
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 1.3e-16 91.3 138 39.1
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 6.6e-16 89.0 131 37.4
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 6.6e-16 89.0 131 37.4
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 8.6e-16 88.6 67 58.2
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 1.1e-15 88.2 132 37.9
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 1.5e-15 87.8 134 38.8
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 1.9e-15 87.4 134 38.1
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 2.5e-15 87.0 133 39.8
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 3.3e-15 86.7 137 40.9
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 5.6e-15 85.9 59 66.1
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 7.3e-15 85.5 135 40.0
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 9.5e-15 85.1 136 36.8
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 1.6e-14 84.3 65 56.9
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 3.6e-14 83.2 138 37.7
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 4.7e-14 82.8 132 38.6
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 6.1e-14 82.4 138 38.4
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 6.1e-14 82.4 138 38.4
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 8.0e-14 82.0 134 36.6
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 1.0e-13 81.6 132 37.9
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 1.4e-13 81.3 132 37.9
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 1.8e-13 80.9 126 39.7
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 1.8e-13 80.9 132 38.6
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 1.8e-13 80.9 132 37.9
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 2.3e-13 80.5 126 38.9
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 8.9e-13 78.6 59 61.0
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.2e-12 78.2 130 36.2
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 1.2e-12 78.2 133 39.1
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 1.2e-12 78.2 133 39.1
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 1.2e-12 78.2 133 39.1
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 2.0e-12 77.4 132 37.1
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 3.4e-12 76.6 132 36.4
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 3.4e-12 76.6 132 36.4
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 3.4e-12 76.6 132 36.4
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 4.4e-12 76.3 135 34.8
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 5.8e-12 75.9 131 35.1
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 7.5e-12 75.5 114 42.1
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 9.8e-12 75.1 59 55.9
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 2.2e-11 73.9 135 33.3
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 6.4e-11 72.4 130 35.4
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 6.4e-11 72.4 137 34.3
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 8.3e-11 72.0 65 53.8
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 1.2e-09 68.2 139 32.4
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 3.5e-09 66.6 132 34.1
CSS0045141 Camellia sinensis var. sinensis HOM05D057576 ORTHO05D043279 1.9e-07 60.8 40 72.5
CSS0050033 Camellia sinensis var. sinensis HOM05D057576 ORTHO05D043279 1.9e-07 60.8 40 72.5
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.2e-06 58.2 64 45.3


User provided reference genes

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