Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.0e-67 260.0 133 100.0
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.8e-46 188.7 106 90.6
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 4.8e-46 188.0 132 72.7
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 6.3e-46 187.6 104 91.3
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.2e-42 174.9 133 68.4
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 5.2e-40 167.9 134 62.7
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.0e-36 156.0 129 58.1
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 4.5e-36 154.8 130 60.0
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 7.7e-36 154.1 131 59.5
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.0e-35 153.7 129 57.4
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 2.5e-34 149.1 130 57.7
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.5e-34 147.9 129 55.0
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.6e-33 146.4 129 54.3
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.6e-33 146.4 129 54.3
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-33 145.6 129 54.3
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.7e-33 145.6 137 54.0
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.7e-33 144.8 134 55.2
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.8e-32 142.9 126 54.0
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 5.2e-32 141.4 130 54.6
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 8.8e-32 140.6 135 54.8
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.2e-31 140.2 130 56.9
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.5e-31 139.8 136 53.7
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 7.5e-31 137.5 119 59.7
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.3e-30 136.7 133 51.9
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 3.7e-30 135.2 129 55.0
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.7e-30 135.2 133 53.4
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 3.7e-30 135.2 131 52.7
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 4.8e-30 134.8 133 53.4
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.8e-30 134.8 136 52.9
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 6.3e-30 134.4 125 57.6
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.1e-29 131.7 136 52.2
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 5.3e-29 131.3 134 53.7
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.6e-28 129.8 133 52.6
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.6e-28 129.8 137 51.1
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.6e-28 129.8 132 53.8
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.7e-28 129.0 125 52.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 2.7e-28 129.0 130 49.2
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.7e-28 129.0 126 56.3
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 5.9e-28 127.9 132 49.2
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 7.7e-28 127.5 124 51.6
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 7.7e-28 127.5 125 50.4
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 1.0e-27 127.1 129 50.4
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.3e-27 126.7 132 49.2
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.2e-27 125.9 130 51.5
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.8e-27 125.2 133 51.9
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.8e-27 125.2 134 48.5
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 6.5e-27 124.4 129 51.9
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 8.5e-27 124.0 121 52.1
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 1.5e-26 123.2 136 50.7
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.5e-26 123.2 121 52.1
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.5e-26 123.2 132 49.2
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.9e-26 122.9 133 50.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.9e-26 122.9 134 47.8
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.9e-26 122.9 136 49.3
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 1.9e-26 122.9 132 47.7
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 2.5e-26 122.5 122 51.6
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.5e-26 122.5 134 48.5
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.5e-26 122.5 133 49.6
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 7.2e-26 120.9 151 47.7
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 9.4e-26 120.6 138 49.3
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.2e-25 120.2 135 50.4
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.1e-25 119.4 113 59.3
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.7e-25 119.0 135 48.9
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.6e-25 118.6 113 59.3
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 4.7e-25 118.2 132 50.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 4.7e-25 118.2 127 50.4
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.4e-24 116.7 138 50.0
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.4e-24 116.7 125 53.6
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.8e-24 116.3 126 50.8
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.3e-24 115.9 131 52.7
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 3.0e-24 115.5 134 50.0
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.2e-24 114.8 138 49.3
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 8.8e-24 114.0 138 49.3
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.2e-23 113.6 130 51.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.5e-23 113.2 131 49.6
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.5e-23 113.2 132 45.5
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.4e-23 111.7 142 46.5
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 7.5e-23 110.9 123 45.5
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 9.8e-23 110.5 125 44.8
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 9.8e-23 110.5 138 45.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.7e-22 109.8 131 46.6
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 3.7e-22 108.6 137 45.3
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.3e-22 107.8 131 50.4
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.1e-21 107.1 134 46.3
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.4e-21 106.7 133 46.6
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 1.8e-21 106.3 122 48.4
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.8e-21 106.3 137 44.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 4.1e-21 105.1 118 46.6
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 5.4e-21 104.8 137 43.8
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 9.1e-21 104.0 134 46.3
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 9.1e-21 104.0 123 47.2
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.7e-20 102.4 132 41.7
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.3e-19 100.1 111 49.5
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 1.7e-19 99.8 113 46.0
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 5.0e-19 98.2 114 49.1
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.1e-18 97.1 129 48.8
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.9e-18 96.3 111 54.1
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 4.2e-18 95.1 130 44.6
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 7.2e-18 94.4 104 53.8
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 7.2e-18 94.4 108 51.9
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 7.2e-18 94.4 104 53.8
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 7.2e-18 94.4 108 51.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.2e-17 93.6 103 53.4
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.6e-17 92.0 104 52.9
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.6e-17 92.0 104 52.9
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 4.7e-17 91.7 104 51.9
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 8.0e-17 90.9 106 50.9
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 8.0e-17 90.9 109 51.4
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 8.0e-17 90.9 113 47.8
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.4e-16 90.1 121 47.9
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 3.0e-16 89.0 110 50.0
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 5.2e-16 88.2 109 50.5
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 5.2e-16 88.2 99 50.5
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 6.8e-16 87.8 109 53.2
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 4.4e-15 85.1 108 48.1
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 9.8e-15 84.0 101 47.5
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.3e-14 83.6 102 48.0
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 2.2e-14 82.8 108 48.1
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.7e-14 82.0 135 40.7
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 4.9e-14 81.6 131 42.0
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 8.3e-14 80.9 147 40.1
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.4e-13 80.1 139 39.6
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.4e-13 80.1 125 40.8
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 2.7e-12 75.9 77 46.8
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 4.5e-12 75.1 131 39.7
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.6e-11 71.2 104 47.1
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 3.3e-10 68.9 129 34.9
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 5.6e-10 68.2 150 38.0
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 5.6e-10 68.2 112 41.1
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 1.2e-09 67.0 136 36.0
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 1.2e-09 67.0 136 36.0
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.6e-09 66.6 146 36.3
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 2.8e-09 65.9 130 33.1
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 6.1e-09 64.7 142 38.0
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 8.0e-09 64.3 133 37.6
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 1.8e-08 63.2 133 36.1
Hma1.2p1_0434F.1_g152190 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 8.9e-08 60.8 53 62.3
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 2.6e-07 59.3 142 35.2
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 5.8e-07 58.2 145 34.5
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 2.9e-06 55.8 128 35.9
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 2.9e-06 55.8 134 34.3
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 4.9e-06 55.1 134 34.3
unitig_21.g20302 Utricularia gibba HOM05D005728 ORTHO05D005733 6.4e-06 54.7 119 34.5


User provided reference genes

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