Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.3e-111 406.4 202 100.0
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.4e-51 205.7 102 100.0
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.3e-46 189.1 106 90.6
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 4.3e-30 135.6 109 65.1
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.6e-29 133.7 110 64.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.6e-27 126.3 112 58.0
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.4e-25 120.6 96 60.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.4e-25 120.6 108 55.6
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 2.4e-25 119.8 106 55.7
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.2e-25 119.4 104 57.7
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.2e-25 119.4 109 56.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 9.3e-25 117.9 107 52.3
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.1e-24 116.7 106 56.6
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.1e-24 116.7 106 53.8
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-24 116.3 104 55.8
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-24 116.3 104 55.8
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.5e-24 115.9 104 55.8
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.5e-24 115.9 104 55.8
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.6e-24 115.5 103 59.2
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.0e-24 115.2 104 56.7
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 6.0e-24 115.2 104 55.8
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 7.9e-24 114.8 104 54.8
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.9e-24 114.8 104 54.8
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.0e-23 114.4 104 56.7
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.8e-23 113.6 104 55.8
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 2.3e-23 113.2 106 56.6
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.9e-23 112.5 96 57.3
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 3.3e-22 109.4 91 59.3
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 4.3e-22 109.0 106 52.8
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 7.4e-22 108.2 103 54.4
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 7.4e-22 108.2 112 52.7
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 9.6e-22 107.8 106 53.8
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 9.6e-22 107.8 99 55.6
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 3.7e-21 105.9 91 58.2
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 4.8e-21 105.5 104 53.8
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 6.2e-21 105.1 106 52.8
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 8.1e-21 104.8 106 51.9
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.1e-20 104.4 104 56.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.1e-20 104.4 93 60.2
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.4e-20 104.0 99 55.6
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.8e-20 103.6 104 56.7
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 3.1e-20 102.8 106 48.1
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-20 102.8 100 52.0
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.1e-20 102.8 104 50.0
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.3e-20 102.1 100 52.0
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 5.3e-20 102.1 109 53.2
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 6.9e-20 101.7 106 48.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.0e-20 101.3 100 52.0
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.0e-19 100.1 106 50.9
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 2.0e-19 100.1 95 60.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 3.4e-19 99.4 96 52.1
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 3.4e-19 99.4 104 51.0
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 4.5e-19 99.0 102 53.9
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 7.6e-19 98.2 108 55.6
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 7.6e-19 98.2 105 51.4
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.0e-18 97.8 98 52.0
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 1.3e-18 97.4 98 50.0
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.7e-18 97.1 106 53.8
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.7e-18 97.1 106 53.8
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.7e-18 97.1 114 52.6
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.9e-18 96.3 98 56.1
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.9e-18 96.3 98 56.1
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.9e-18 96.3 106 50.0
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 6.5e-18 95.1 106 52.8
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 6.5e-18 95.1 103 52.4
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 6.5e-18 95.1 105 52.4
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 8.4e-18 94.7 106 52.8
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 8.4e-18 94.7 106 52.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.1e-17 94.4 106 51.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.5e-17 93.2 100 55.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 2.5e-17 93.2 102 51.0
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 3.2e-17 92.8 96 51.0
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 3.2e-17 92.8 106 52.8
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.2e-17 92.4 110 50.9
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 5.5e-17 92.0 135 40.7
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 7.1e-17 91.7 99 53.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 7.1e-17 91.7 109 48.6
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 7.1e-17 91.7 107 45.8
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 7.1e-17 91.7 101 51.5
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 7.1e-17 91.7 110 50.9
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 9.3e-17 91.3 99 50.5
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 9.3e-17 91.3 107 47.7
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.2e-16 90.9 101 51.5
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.6e-16 90.5 91 52.7
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 2.1e-16 90.1 106 51.9
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 2.1e-16 90.1 105 43.8
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.1e-16 90.1 99 48.5
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.7e-16 89.7 103 49.5
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 6.0e-16 88.6 107 46.7
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 7.9e-16 88.2 109 51.4
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.0e-15 87.8 101 46.5
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.3e-15 87.4 106 42.5
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.3e-15 87.4 106 45.3
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.8e-15 87.0 104 43.3
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.8e-15 87.0 103 45.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.8e-15 87.0 107 48.6
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 2.3e-15 86.7 140 40.7
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 3.0e-15 86.3 99 49.5
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 3.9e-15 85.9 98 52.0
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 5.1e-15 85.5 109 53.2
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 8.7e-15 84.7 136 40.4
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 1.1e-14 84.3 106 45.3
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-14 84.0 105 49.5
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.9e-14 83.6 116 44.8
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 2.5e-14 83.2 103 44.7
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 3.3e-14 82.8 98 52.0
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.3e-14 82.4 119 42.9
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.7e-14 82.0 89 51.7
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 5.7e-14 82.0 106 47.2
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.3e-13 80.9 121 45.5
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 6.2e-13 78.6 105 42.9
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.2e-13 78.6 105 44.8
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.1e-12 77.8 104 46.2
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.4e-12 76.6 105 47.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 5.3e-12 75.5 103 43.7
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.9e-12 75.1 96 44.8
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.5e-11 73.9 104 46.2
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 7.6e-11 71.6 106 41.5
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 8.4e-10 68.2 102 43.1
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 9.3e-09 64.7 98 42.9
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.5e-08 62.8 110 41.8
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 1.0e-07 61.2 102 42.2
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.9e-07 59.3 103 39.8
Hma1.2p1_0434F.1_g152190 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 7.4e-06 55.1 40 70.0


User provided reference genes

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