Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.3e-309 1064.7 514 100.0
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 4.7e-267 924.1 525 85.0
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 3.1e-266 921.4 525 84.6
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.1e-262 908.7 525 83.2
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 2.1e-243 845.5 524 75.6
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 9.0e-242 840.1 696 64.2
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.7e-240 835.9 523 73.8
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 7.1e-239 830.5 523 73.0
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 1.2e-238 829.7 524 73.9
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 3.9e-237 824.7 524 73.5
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 6.3e-235 817.4 554 76.9
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 8.5e-232 807.0 521 72.9
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.1e-231 806.6 528 72.9
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 5.5e-231 804.3 514 73.7
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 3.6e-230 801.6 521 74.7
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 7.9e-230 800.4 525 73.9
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 2.5e-228 795.4 519 73.2
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 4.3e-228 794.7 515 73.4
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 2.8e-227 792.0 519 70.9
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.7e-227 791.6 536 70.7
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 3.7e-227 791.6 509 74.1
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 4.8e-227 791.2 521 72.2
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 4.8e-227 791.2 513 73.5
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.4e-226 789.6 519 72.3
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 1.4e-226 789.6 521 70.1
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 4.1e-226 788.1 518 70.5
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 1.5e-225 786.2 521 70.4
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 2.6e-225 785.4 514 72.4
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 2.6e-225 785.4 513 72.5
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 3.4e-225 785.0 521 70.2
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 4.5e-225 784.6 522 69.7
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 5.9e-225 784.3 518 71.8
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.7e-224 782.7 514 72.6
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.9e-224 781.9 520 71.3
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 2.9e-224 781.9 518 69.9
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 3.8e-224 781.6 518 70.7
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 6.5e-224 780.8 518 70.5
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 7.2e-223 777.3 518 70.7
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 7.2e-223 777.3 521 69.9
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 9.4e-223 776.9 509 72.9
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 2.7e-222 775.4 516 70.3
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 1.8e-221 772.7 520 70.6
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 1.8e-221 772.7 518 69.3
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 1.8e-221 772.7 514 71.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 3.3e-220 768.5 533 69.4
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 4.4e-220 768.1 515 69.9
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 4.4e-220 768.1 514 71.2
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 7.4e-220 767.3 521 70.6
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 8.2e-219 763.8 520 65.6
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.1e-218 763.5 497 70.8
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.1e-218 763.5 521 67.9
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 4.5e-217 758.1 516 66.9
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 5.9e-217 757.7 518 66.6
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 3.8e-216 755.0 483 73.3
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 5.0e-216 754.6 518 65.1
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 5.0e-216 754.6 488 71.7
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 4.2e-215 751.5 512 68.6
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 7.2e-215 750.7 576 63.9
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 1.6e-214 749.6 512 68.4
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 2.1e-214 749.2 514 69.3
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 2.1e-214 749.2 521 67.4
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 4.7e-214 748.0 516 67.2
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 8.0e-214 747.3 519 65.1
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 8.8e-213 743.8 514 68.7
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.0e-212 742.7 517 69.8
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 5.7e-212 741.1 564 63.5
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 9.7e-212 740.3 515 68.9
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.3e-211 737.6 519 65.5
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 6.3e-211 737.6 519 65.5
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 1.8e-210 736.1 519 65.1
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 9.1e-210 733.8 519 64.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 1.0e-208 730.3 519 64.5
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 2.2e-208 729.2 519 64.2
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.9e-207 726.1 518 68.5
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 5.5e-207 724.5 469 71.6
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 1.0e-205 720.3 543 61.9
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 5.2e-205 718.0 519 65.7
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 3.4e-204 715.3 522 66.1
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 9.7e-204 713.8 544 61.2
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 1.3e-203 713.4 510 68.8
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 7.0e-202 707.6 519 63.0
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 2.9e-200 702.2 589 60.4
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.1e-199 700.3 527 62.4
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 7.2e-199 697.6 523 61.8
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 4.0e-197 691.8 522 63.0
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 5.2e-197 691.4 441 74.6
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 6.1e-190 667.9 503 66.0
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 1.4e-189 666.8 529 59.2
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.4e-186 656.0 578 59.2
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 9.2e-186 654.1 435 69.0
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.5e-183 646.0 524 61.8
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 1.6e-182 643.3 398 75.9
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 4.0e-181 638.6 512 62.7
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 5.8e-180 634.8 518 62.0
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 1.7e-179 633.3 391 73.9
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 7.0e-178 627.9 358 87.4
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.3e-167 592.0 383 73.6
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 3.6e-166 589.0 420 65.2
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 8.6e-160 567.8 333 77.5
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 1.5e-159 567.0 493 58.4
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 2.1e-158 563.1 523 51.2
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 9.9e-156 554.3 532 50.9
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.2e-154 548.9 305 82.6
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 6.0e-153 545.0 507 55.6
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.9e-147 526.2 349 71.3
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 4.2e-146 522.3 503 53.1
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.2e-140 504.2 282 82.3
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.6e-140 503.1 514 52.5
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.9e-130 470.3 252 85.3
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 8.7e-128 461.5 548 44.0
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.3e-126 457.6 339 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 2.2e-123 446.8 446 48.9
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.1e-117 427.9 228 86.4
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.1e-117 427.9 228 86.4
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 4.5e-116 422.5 286 70.3
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 1.6e-113 414.1 230 80.4
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 3.9e-112 409.5 228 80.3
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 1.2e-92 344.7 516 42.1
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 9.4e-82 308.5 166 83.1
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.4e-77 293.9 364 50.8
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.3e-70 271.6 229 59.4
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.2e-70 270.8 210 65.2
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 2.9e-70 270.4 169 73.4
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 8.3e-70 268.9 490 35.1
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.1e-69 266.5 207 66.2
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 5.4e-69 266.2 562 31.5
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 3.5e-68 263.5 513 34.7
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 3.0e-67 260.4 538 34.0
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 7.8e-60 235.7 190 58.4
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.6e-52 211.5 262 44.7
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 8.6e-51 205.7 325 40.0
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 2.5e-42 177.6 163 58.3
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 5.1e-35 153.3 85 75.3
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.5e-34 151.8 199 46.7
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.8e-32 144.8 78 87.2
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 2.2e-30 137.9 106 63.2
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.2e-29 133.7 103 68.0
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 6.6e-27 126.3 299 35.5
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 1.4e-24 118.6 107 56.1
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.4e-24 118.6 119 49.6
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 4.9e-22 110.2 85 61.2
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.2e-21 107.1 90 58.9
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 9.3e-13 79.3 41 75.6
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 3.0e-11 74.3 51 62.7
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 6.3e-09 66.6 80 46.2
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 5.3e-08 63.5 118 33.1
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 2.2e-06 58.2 204 24.5
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 2.9e-06 57.8 44 56.8


User provided reference genes

Program Settings