Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.9e-171 605.1 307 100.0
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.6e-127 459.1 315 77.8
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.2e-126 456.1 315 77.5
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 1.2e-111 407.1 319 70.8
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.2e-109 399.1 314 69.7
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 1.9e-106 389.8 344 64.5
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 7.1e-101 371.3 317 64.0
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.3e-97 360.5 307 64.2
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 8.1e-97 357.8 307 64.2
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 7.6e-95 351.3 299 62.5
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 2.1e-92 343.2 266 66.9
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 8.7e-91 337.8 320 59.1
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 4.3e-90 335.5 320 58.4
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 5.6e-90 335.1 321 58.3
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.3e-89 334.0 284 63.0
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.1e-89 333.2 291 60.8
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 2.1e-89 333.2 291 62.2
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 3.6e-89 332.4 299 59.5
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.8e-88 330.1 296 59.1
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 1.2e-87 327.4 298 59.4
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 2.6e-87 326.2 292 58.9
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 4.5e-87 325.5 298 58.1
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 4.5e-87 325.5 316 56.0
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 5.8e-87 325.1 316 56.0
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 5.8e-87 325.1 306 58.5
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.7e-86 323.6 313 58.5
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.7e-86 323.6 316 56.0
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 1.7e-86 323.6 308 57.1
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 2.9e-86 322.8 318 55.7
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 6.4e-86 321.6 304 56.6
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 6.4e-86 321.6 304 58.2
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.4e-85 320.5 324 55.2
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.4e-85 320.5 304 57.9
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.9e-85 320.1 304 57.9
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 1.9e-85 320.1 272 61.0
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.9e-85 320.1 304 57.2
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 4.2e-85 318.9 292 57.2
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.2e-85 318.9 295 59.3
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 1.2e-84 317.4 296 57.4
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 2.1e-84 316.6 288 59.7
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 3.5e-84 315.8 281 58.0
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 4.6e-84 315.5 281 58.7
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.0e-83 314.3 266 62.4
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 3.0e-83 312.8 318 55.3
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.1e-82 310.8 303 56.1
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 2.5e-82 309.7 318 53.8
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 4.3e-82 308.9 316 54.7
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.6e-81 307.0 304 53.9
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 2.8e-81 306.2 312 55.8
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 3.7e-81 305.8 276 58.7
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 5.3e-80 302.0 268 58.6
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 9.0e-80 301.2 269 58.4
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 1.5e-79 300.4 322 54.0
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.6e-79 299.7 276 58.0
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 3.4e-79 299.3 318 52.8
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 1.0e-78 297.7 262 60.7
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 1.0e-78 297.7 292 55.8
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.7e-78 297.0 266 59.0
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 2.2e-78 296.6 312 52.6
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.4e-77 293.9 308 52.3
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 2.1e-76 290.0 263 59.7
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 3.5e-76 289.3 303 55.1
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 1.3e-75 287.3 311 55.6
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.3e-75 287.3 304 54.6
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 1.8e-75 287.0 307 54.4
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.3e-75 286.6 308 56.2
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 4.3e-74 282.3 309 54.7
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.6e-73 280.4 283 57.2
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 2.8e-73 279.6 271 55.4
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 4.8e-73 278.9 307 54.7
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 2.4e-72 276.6 303 54.1
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 4.1e-72 275.8 272 56.6
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 2.0e-71 273.5 270 58.1
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 5.0e-70 268.9 324 48.1
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 4.6e-68 262.3 293 48.1
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 7.9e-68 261.5 300 49.0
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.0e-67 261.2 291 50.5
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.8e-67 260.4 292 49.0
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 1.5e-66 257.3 301 48.5
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.9e-66 256.9 247 55.9
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 1.9e-66 256.9 242 59.1
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.4e-64 250.8 251 54.6
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 4.1e-64 249.2 161 77.6
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 1.2e-63 247.7 274 53.6
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.5e-63 247.3 249 54.2
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 1.7e-62 243.8 238 55.5
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 3.8e-62 242.7 153 80.4
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 3.8e-62 242.7 381 40.2
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 2.5e-61 240.0 248 51.6
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 9.4e-61 238.0 276 49.3
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 9.7e-58 228.0 297 46.1
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 6.9e-56 221.9 289 47.4
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 6.9e-56 221.9 157 72.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 5.9e-55 218.8 273 45.8
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.3e-54 217.6 260 48.5
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.9e-54 216.5 198 58.1
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 1.4e-53 214.2 204 53.4
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.3e-51 206.8 250 49.6
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.6e-50 203.4 131 76.3
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 4.8e-49 199.1 226 49.6
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 5.9e-47 192.2 280 39.3
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 2.2e-46 190.3 289 38.4
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 3.1e-40 169.9 205 50.7
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 9.4e-37 158.3 185 54.1
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 8.0e-36 155.2 105 74.3
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 6.8e-35 152.1 223 41.7
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 4.4e-34 149.4 282 35.1
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 6.3e-33 145.6 171 48.5
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 8.3e-33 145.2 136 58.1
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.1e-32 143.3 105 70.5
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 1.2e-31 141.4 161 43.5
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.1e-29 134.8 139 54.0
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 4.2e-29 132.9 131 55.7
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 4.0e-27 126.3 87 70.1
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 6.8e-27 125.6 145 47.6
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 3.4e-26 123.2 100 65.0
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 4.4e-26 122.9 82 75.6
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.8e-16 90.9 109 49.5
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 3.2e-16 90.1 72 65.3
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.3e-14 84.7 101 45.5
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.3e-14 84.0 83 57.8
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 4.3e-13 79.7 139 42.4
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 7.3e-13 79.0 82 57.3
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 4.4e-10 69.7 152 30.3
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 1.4e-08 64.7 54 61.1
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 1.9e-08 64.3 87 41.4
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 5.4e-08 62.8 95 37.9
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 1.2e-07 61.6 191 26.2
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 4.6e-07 59.7 59 61.0
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 6.0e-07 59.3 61 59.0
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 1.7e-06 57.8 60 53.3
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.3e-06 57.4 246 24.8
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 3.0e-06 57.0 157 28.7
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 3.9e-06 56.6 176 27.3
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 3.9e-06 56.6 157 28.7
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.0e-06 56.2 43 53.5
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 8.6e-06 55.5 146 28.8


User provided reference genes

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