Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.6e-233 811.2 407 100.0
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.8e-180 634.0 448 76.6
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.0e-132 474.9 389 67.4
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.2e-103 380.9 384 58.9
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.2e-100 370.9 384 57.6
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.1e-96 357.8 359 57.7
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 9.1e-96 354.8 377 54.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.4e-90 335.9 377 52.0
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.8e-88 330.5 377 52.5
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.1e-88 329.3 388 50.5
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 6.1e-84 315.5 386 50.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.4e-80 303.5 414 46.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.0e-78 298.1 385 47.3
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 6.6e-78 295.4 379 47.8
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 6.6e-78 295.4 379 47.8
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.6e-76 290.8 385 47.3
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 2.1e-76 290.4 380 47.6
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 3.4e-74 283.1 379 46.4
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.2e-73 280.4 385 46.2
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.1e-72 278.1 384 45.6
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.4e-72 277.7 383 47.8
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.2e-71 274.6 381 45.4
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 2.7e-71 273.5 380 45.5
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.9e-71 272.3 384 44.8
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.9e-71 272.3 384 45.1
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.9e-69 267.3 389 43.4
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 4.3e-69 266.2 379 44.1
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.4e-67 261.2 385 42.9
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.8e-67 260.8 393 44.3
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.2e-65 253.8 380 42.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 3.7e-65 253.1 378 42.1
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 3.7e-65 253.1 382 43.2
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 4.9e-65 252.7 354 44.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.3e-65 251.9 356 44.9
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 2.4e-64 250.4 373 45.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 3.2e-64 250.0 384 42.4
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 5.4e-64 249.2 300 50.3
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.2e-63 248.1 357 45.1
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.7e-63 246.9 356 44.1
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 5.0e-62 242.7 383 41.8
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.3e-61 240.0 378 40.7
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 7.3e-61 238.8 379 40.6
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.2e-60 238.0 378 40.7
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.6e-60 236.5 381 43.0
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 6.2e-60 235.7 379 40.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.4e-59 234.6 378 41.3
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 7.5e-58 228.8 404 39.4
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 8.3e-57 225.3 364 41.5
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.9e-56 224.2 391 40.2
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 5.4e-56 222.6 398 41.7
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.1e-56 222.2 411 38.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.1e-56 222.2 411 38.4
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 7.1e-56 222.2 380 40.8
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 7.1e-56 222.2 328 44.5
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 7.1e-56 222.2 406 39.9
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 9.2e-56 221.9 307 47.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 6.0e-55 219.2 159 71.7
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 7.8e-55 218.8 379 40.9
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.3e-54 218.0 299 45.2
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.3e-54 218.0 381 39.9
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.7e-54 217.6 387 38.2
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.9e-53 214.2 407 38.8
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.1e-52 210.7 408 38.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.1e-51 208.4 376 42.3
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-51 207.6 388 39.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.3e-51 207.2 356 40.2
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.3e-51 207.2 397 38.3
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 5.2e-51 206.1 388 37.1
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.4e-49 199.1 380 38.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 6.4e-49 199.1 382 37.7
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 4.1e-48 196.4 297 42.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.6e-46 189.1 322 39.8
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 4.3e-45 186.4 383 34.7
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 8.1e-44 182.2 390 35.9
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.1e-43 181.8 332 40.7
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.0e-43 179.9 321 38.0
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.2e-41 174.1 424 34.7
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.8e-41 173.3 387 34.9
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 9.3e-40 168.7 425 34.1
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.1e-39 167.5 375 34.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.7e-39 167.2 421 34.9
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.5e-39 166.8 372 36.3
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.7e-38 164.5 373 35.4
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 6.6e-38 162.5 386 34.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.9e-37 161.0 379 36.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 4.3e-37 159.8 384 34.4
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 4.3e-37 159.8 391 33.8
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-36 158.3 390 34.4
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 6.2e-36 156.0 390 34.1
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 6.2e-36 156.0 390 34.1
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 8.1e-36 155.6 393 33.1
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.1e-35 155.2 385 31.2
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.8e-35 154.5 390 33.8
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 2.0e-34 151.0 390 33.6
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.4e-34 149.8 330 34.5
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 4.4e-34 149.8 265 37.7
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 7.6e-34 149.1 330 36.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.7e-33 147.9 382 32.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 3.8e-33 146.7 352 34.4
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 6.4e-33 146.0 405 31.9
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.4e-32 144.8 352 33.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.9e-32 144.4 412 33.0
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.4e-32 144.1 469 28.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.2e-32 143.3 354 31.1
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 6.0e-31 139.4 447 30.2
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 7.8e-31 139.0 401 31.2
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.3e-30 138.3 112 64.3
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 3.9e-30 136.7 284 36.6
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.3e-28 131.7 392 30.6
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.6e-28 131.3 363 29.8
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.1e-28 131.0 162 48.1
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 6.2e-28 129.4 392 30.9
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.8e-27 127.9 391 31.7
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.4e-27 127.5 306 34.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.1e-27 127.1 379 30.9
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 9.9e-26 122.1 382 31.7
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 9.9e-26 122.1 408 29.7
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-24 118.2 99 65.7
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 7.1e-24 115.9 265 36.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.1e-23 114.4 320 32.2
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 6.0e-23 112.8 393 28.8
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-22 111.7 130 54.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.5e-21 107.5 149 40.9
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.8e-20 103.2 385 28.8
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.4e-19 101.7 381 27.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.8e-19 101.3 394 26.6
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.5e-18 96.7 242 32.2
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.0e-17 95.5 417 24.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 3.2e-16 90.5 90 53.3
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.1e-11 75.5 306 27.1
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 5.3e-11 73.2 306 26.8
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 6.9e-11 72.8 389 27.0
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 6.5e-09 66.2 78 48.7
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.1e-08 65.5 314 24.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.2e-08 63.5 425 24.2
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 7.1e-08 62.8 299 24.1
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.7e-07 60.8 289 25.3
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.0e-06 58.9 103 37.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.0e-06 58.9 414 24.6


User provided reference genes

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