Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0199300 Rhododendron simsii HOM05D008183 ORTHO05D007254 8.2e-151 537.0 259 100.0
Rhsim09G0146400 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.0e-47 194.5 127 69.3
Rhsim12G0012200 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.3e-18 97.8 156 36.5
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 9.1e-17 91.7 132 36.4
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 9.1e-17 91.7 121 31.4
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-16 91.3 220 26.8
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-16 91.3 132 36.4
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.2e-16 91.3 236 26.3
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.8e-15 86.3 166 32.5
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 1.1e-14 84.7 133 31.6
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 1.5e-14 84.3 121 32.2
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.2e-14 82.0 175 30.9
Rhsim02G0165900 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.2e-14 82.0 101 45.5
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.5e-14 81.6 111 36.9
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.6e-13 80.9 110 38.2
Atru.chr2.1508 Acer truncatum HOM05D000003 ORTHO05D000006 2.1e-13 80.5 230 27.0
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.0e-13 78.6 162 28.4
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.0e-12 76.6 161 30.4
CiPaw.15G166300 Carya illinoinensis HOM05D000003 ORTHO05D000004 4.0e-12 76.3 200 25.5
Rhsim13G0172400 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.0e-12 76.3 116 35.3
RhsimUnG0231800 Rhododendron simsii HOM05D000003 ORTHO05D000126 4.0e-12 76.3 44 86.4
CSS0013596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 6.8e-12 75.5 130 31.5
Manes.15G180112 Manihot esculenta HOM05D031063 ORTHO05D025811 1.5e-11 74.3 169 27.8
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.4e-11 73.2 135 32.6
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.4e-11 72.8 351 21.9
Lj6g0001642 Lotus japonicus HOM05D000003 ORTHO05D000167 5.7e-11 72.4 175 29.1
FvH4_3g10392 Fragaria vesca HOM05D008133 ORTHO05D009449 9.8e-11 71.6 121 33.1
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 9.8e-11 71.6 157 27.4
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.7e-10 70.9 193 26.9
FvH4_3g28461 Fragaria vesca HOM05D000003 ORTHO05D014631 2.8e-10 70.1 209 25.8
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-10 69.3 146 29.5
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.1e-09 68.2 163 27.0
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-09 67.8 144 31.9
Rhsim03G0157700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-09 67.4 118 31.4
CANSAT35G1027 Cannabis sativa HOM05D000003 ORTHO05D000004 3.2e-09 66.6 184 24.5
COL.COLO4_22232 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.4e-09 65.9 140 30.0
RhsimUnG0169300 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.4e-09 65.9 64 50.0
TPR.G22130 Trifolium pratense HOM05D000003 ORTHO05D000004 7.0e-09 65.5 160 24.4
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 9.2e-09 65.1 107 30.8
Aa31LG9G1250 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-08 64.7 111 32.4
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.2e-08 64.7 107 30.8
FvH4_7g06171 Fragaria vesca HOM05D000003 ORTHO05D000006 1.2e-08 64.7 109 33.9
Aa31LG3G4270 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-08 64.3 198 26.3
COL.COLO4_35856 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.6e-08 64.3 109 32.1
TAR131G0003 Trochodendron aralioides HOM05D000003 ORTHO05D011990 2.0e-08 63.9 119 29.4
CSS0043790 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.5e-08 62.8 52 51.9
Aa31LG5G21260 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.9e-08 62.4 102 33.3
BraA08t32258Z Brassica rapa HOM05D000003 ORTHO05D001498 5.9e-08 62.4 163 25.8
COL.COLO4_36252 Corchorus olitorius HOM05D000003 ORTHO05D000126 5.9e-08 62.4 98 32.7
Rhsim04G0047200 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.9e-08 62.4 150 27.3
CiPaw.02G051300 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.8e-08 62.0 213 23.9
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 7.8e-08 62.0 92 30.4
RhsimUnG0053200 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.8e-08 62.0 57 45.6
BcaC09g49873 Brassica carinata HOM05D000003 ORTHO05D000004 1.0e-07 61.6 145 26.9
Cc04_g14660 Coffea canephora HOM05D000003 ORTHO05D000167 1.3e-07 61.2 97 34.0
vmacro06901 Vaccinium macrocarpon HOM05D004933 ORTHO05D005465 1.3e-07 61.2 138 26.8
Aa31LG11G9070 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.7e-07 60.8 152 25.7
Aa31LG4G19060 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.7e-07 60.8 57 45.6
BcaNung01080 Brassica carinata HOM05D000003 ORTHO05D001498 1.7e-07 60.8 130 31.5
COL.COLO4_20252 Corchorus olitorius HOM05D000003 ORTHO05D007254 2.3e-07 60.5 115 27.8
PSO532G0007 Papaver somniferum HOM05D003407 ORTHO05D001026 2.3e-07 60.5 128 33.6
QL06p039011 Quercus lobata HOM05D000003 ORTHO05D000004 2.3e-07 60.5 57 42.1
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 2.3e-07 60.5 141 29.8
TAR682G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.3e-07 60.5 63 46.0
CANSAT21G2476 Cannabis sativa HOM05D000003 ORTHO05D000004 2.9e-07 60.1 148 29.7
RcHm_v2.0_Chr4g0410641 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-07 60.1 57 45.6
Sp1g25350 Schrenkiella parvula HOM05D000003 ORTHO05D004851 2.9e-07 60.1 106 30.2
Atru.chr1.1373 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-07 59.7 57 45.6
PSO210G3048 Papaver somniferum HOM05D000003 ORTHO05D000004 3.9e-07 59.7 185 26.5
QL04p093906 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-07 59.7 189 27.5
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.9e-07 59.7 196 25.0
Aa31LG1G4960 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.0e-07 59.3 159 28.9
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 5.0e-07 59.3 114 30.7
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 5.0e-07 59.3 137 29.9
CSS0044575 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.6e-07 58.9 50 54.0
CANSAT80G2469 Cannabis sativa HOM05D000003 ORTHO05D009135 6.6e-07 58.9 103 35.0
PSO017G1972 Papaver somniferum HOM05D000003 ORTHO05D000004 6.6e-07 58.9 291 20.6
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 6.6e-07 58.9 50 54.0
TAR370G0008 Trochodendron aralioides HOM05D000003 ORTHO05D000004 6.6e-07 58.9 118 34.7
Aa31csc275G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.6e-07 58.5 57 43.9
AT2G34320 Arabidopsis thaliana HOM05D000003 ORTHO05D001091 8.6e-07 58.5 104 31.7
FvH4_6g11620 Fragaria vesca HOM05D008133 ORTHO05D009449 8.6e-07 58.5 136 27.2
Lj3g0025529 Lotus japonicus HOM05D000003 ORTHO05D000167 8.6e-07 58.5 161 28.0
EL10Ac4g08380 Beta vulgaris HOM05D000003 ORTHO05D000004 1.1e-06 58.2 115 33.0
BcaB05g21914 Brassica carinata HOM05D000003 ORTHO05D001498 1.1e-06 58.2 118 30.5
CANSAT01G2953 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 58.2 230 23.5
CANSAT11G0402 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 58.2 155 29.0
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 57.8 52 50.0
Aa31sc1394G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.5e-06 57.8 49 49.0
Rhsim01G0161700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-06 57.8 52 48.1
Rhsim07G0162700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-06 57.8 47 55.3
RcHm_v2.0_Chr5g0072911 Rosa chinensis HOM05D000003 ORTHO05D011656 1.5e-06 57.8 135 29.6
TAR133G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.5e-06 57.8 101 37.6
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 57.4 57 43.9
BcaB05g22432 Brassica carinata HOM05D000003 ORTHO05D000004 1.9e-06 57.4 111 28.8
CSS0016262 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-06 57.4 53 52.8
PSO782G1244 Papaver somniferum HOM05D000003 ORTHO05D000004 1.9e-06 57.4 185 25.9
Rhsim01G0194100 Rhododendron simsii HOM05D018264 ORTHO05D018096 1.9e-06 57.4 144 29.9
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.9e-06 57.4 52 46.2
RhsimUnG0247100 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.9e-06 57.4 57 45.6
TPR.G31113 Trifolium pratense HOM05D000003 ORTHO05D000004 1.9e-06 57.4 134 26.1
BcaB03g16045 Brassica carinata HOM05D000003 ORTHO05D001498 2.5e-06 57.0 129 29.5
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.5e-06 57.0 119 31.1
CANSAT25G0727 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-06 57.0 154 27.9
CANSAT80G2259 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-06 57.0 94 33.0
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.5e-06 57.0 133 27.8
Rhsim13G0075600 Rhododendron simsii HOM05D018264 ORTHO05D018096 2.5e-06 57.0 146 28.1
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-06 56.6 81 39.5
BcaB02g10097 Brassica carinata HOM05D000003 ORTHO05D001498 3.3e-06 56.6 130 30.0
Nn6g31622 Nelumbo nucifera HOM05D015489 ORTHO05D013616 3.3e-06 56.6 109 30.3
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 3.3e-06 56.6 175 23.4
Rhsim09G0012500 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.3e-06 56.6 122 27.9
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.3e-06 56.6 47 53.2
Aa31LG10G8080 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.3e-06 56.2 57 42.1
CSS0020934 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.3e-06 56.2 56 46.4
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-06 56.2 157 24.8
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 4.3e-06 56.2 101 30.7
FvH4_2g06831 Fragaria vesca HOM05D011824 ORTHO05D035622 4.3e-06 56.2 132 32.6
TPR.G7655 Trifolium pratense HOM05D000003 ORTHO05D000004 4.3e-06 56.2 148 23.6
Atru.chr12.2026 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-06 55.8 158 27.2
Aa31LG10G7630 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.6e-06 55.8 57 42.1
Ah.12g061120 Amaranthus hybridus HOM05D000003 ORTHO05D000167 5.6e-06 55.8 118 32.2
BolC6t37438H Brassica oleracea HOM05D000003 ORTHO05D001498 5.6e-06 55.8 159 26.4
CSS0022739 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.6e-06 55.8 56 46.4
Lj3g0004568 Lotus japonicus HOM05D000003 ORTHO05D007254 5.6e-06 55.8 112 28.6
Lj5g0017569 Lotus japonicus HOM05D000003 ORTHO05D007254 5.6e-06 55.8 138 23.9
Rhsim02G0110700 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.6e-06 55.8 60 50.0
RcHm_v2.0_Chr1g0323031 Rosa chinensis HOM05D011824 ORTHO05D017030 5.6e-06 55.8 138 29.7
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 5.6e-06 55.8 120 25.0
TPR.G852 Trifolium pratense HOM05D000003 ORTHO05D000004 5.6e-06 55.8 130 26.9
Lj2g0023475 Lotus japonicus HOM05D000003 ORTHO05D007254 7.3e-06 55.5 108 32.4
TPR.G37077 Trifolium pratense HOM05D000003 ORTHO05D000004 7.3e-06 55.5 154 28.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.3e-06 55.5 115 27.0
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 9.5e-06 55.1 88 38.6
Aa31LG9G1700 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.5e-06 55.1 129 24.8
CANSAT64G1154 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-06 55.1 89 34.8


User provided reference genes

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