Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 2.7e-95 352.1 183 100.0
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 1.3e-62 243.4 156 82.7
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 5.1e-46 188.3 151 70.2
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 5.1e-46 188.3 117 76.9
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 3.2e-40 169.1 156 66.0
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 7.8e-39 164.5 134 62.7
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 1.0e-38 164.1 149 60.4
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 3.0e-38 162.5 112 72.3
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 6.6e-38 161.4 111 71.2
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 1.1e-37 160.6 152 62.5
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 1.9e-37 159.8 106 72.6
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 2.5e-37 159.5 111 70.3
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 3.3e-37 159.1 109 73.4
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 4.3e-37 158.7 163 55.8
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 9.6e-37 157.5 162 58.6
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 9.6e-37 157.5 163 55.8
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.6e-36 156.8 112 68.8
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 2.1e-36 156.4 153 55.6
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 2.8e-36 156.0 165 60.6
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.6e-36 155.6 111 69.4
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 3.6e-36 155.6 155 58.7
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 3.6e-36 155.6 150 60.0
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 4.8e-36 155.2 155 58.7
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 6.2e-36 154.8 112 67.9
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 6.2e-36 154.8 112 67.9
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 8.1e-36 154.5 111 68.5
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 1.4e-35 153.7 111 71.2
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 1.4e-35 153.7 111 71.2
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.8e-35 153.3 134 61.2
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 2.4e-35 152.9 110 68.2
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 3.1e-35 152.5 155 61.3
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 4.0e-35 152.1 110 68.2
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 4.0e-35 152.1 155 61.3
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 5.3e-35 151.8 157 60.5
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 6.9e-35 151.4 153 59.5
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 9.0e-35 151.0 115 65.2
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 3.4e-34 149.1 160 58.8
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 4.5e-34 148.7 114 66.7
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 4.5e-34 148.7 158 58.2
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 5.8e-34 148.3 110 67.3
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 5.8e-34 148.3 88 78.4
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 9.9e-34 147.5 154 54.5
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.3e-33 147.1 121 63.6
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 4.9e-33 145.2 88 75.0
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 8.4e-33 144.4 127 58.3
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 1.4e-32 143.7 158 56.3
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 4.2e-32 142.1 129 62.8
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 4.2e-32 142.1 109 66.1
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 3.5e-31 139.0 131 55.0
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 1.0e-30 137.5 131 54.2
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.3e-30 137.1 129 55.0
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 6.7e-30 134.8 93 69.9
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 8.7e-30 134.4 113 59.3
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 8.7e-30 134.4 78 74.4
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 8.7e-30 134.4 134 53.7
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 1.5e-29 133.7 197 41.1
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 1.9e-29 133.3 83 79.5
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 3.3e-29 132.5 110 61.8
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 3.3e-29 132.5 80 77.5
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 4.3e-29 132.1 95 65.3
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 1.6e-28 130.2 78 73.1
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 1.6e-28 130.2 70 81.4
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 1.1e-27 127.5 88 67.0
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 1.4e-27 127.1 113 59.3
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 3.1e-27 125.9 110 60.0
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 3.1e-27 125.9 86 67.4
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 5.3e-27 125.2 95 65.3
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 1.5e-26 123.6 114 55.3
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 3.4e-26 122.5 87 66.7
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 5.8e-26 121.7 135 53.3
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 7.6e-26 121.3 95 63.2
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 7.6e-26 121.3 86 64.0
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 9.9e-26 120.9 104 58.7
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 9.9e-26 120.9 78 71.8
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 1.3e-25 120.6 135 51.9
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 1.7e-25 120.2 132 53.8
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.7e-25 120.2 132 53.0
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 2.2e-25 119.8 132 53.0
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 2.9e-25 119.4 104 57.7
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 3.8e-25 119.0 132 53.8
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 3.8e-25 119.0 132 53.8
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 3.8e-25 119.0 132 53.8
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.9e-24 116.7 70 71.4
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 2.1e-23 113.2 90 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 3.5e-23 112.5 71 69.0
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 6.0e-23 111.7 127 56.7
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 5.6e-21 105.1 83 68.7
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 4.8e-20 102.1 75 64.0
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 9.0e-19 97.8 135 49.6
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 5.8e-18 95.1 133 50.4
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 1.7e-17 93.6 65 63.1
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 2.2e-17 93.2 65 63.1
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 3.8e-17 92.4 52 69.2
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 3.2e-16 89.4 99 53.5
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 1.3e-14 84.0 85 57.6
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 3.0e-14 82.8 74 67.6
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 2.8e-12 76.3 77 55.8
PGR119G2080 Punica granatum HOM05D007375 ORTHO05D009293 1.0e-09 67.8 46 71.7
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 2.2e-09 66.6 36 88.9
DCAR_012259 Daucus carota HOM05D007375 ORTHO05D009293 3.8e-09 65.9 128 43.0
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 1.9e-08 63.5 31 80.6
Cre03.g201050 Chlamydomonas reinhardtii HOM05D007375 ORTHO05D009293 9.4e-08 61.2 101 32.7
MCO03G284 Micromonas commoda HOM05D007375 ORTHO05D009293 5.1e-06 55.5 70 40.0


User provided reference genes

Program Settings