Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 1.3e-258 896.0 475 100.0
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 3.1e-63 246.9 206 72.8
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.4e-60 238.0 418 40.9
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 3.1e-55 220.3 405 42.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 6.5e-53 212.6 421 36.8
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 6.5e-53 212.6 456 36.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 2.5e-52 210.7 460 36.7
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 7.2e-52 209.1 426 36.9
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 3.6e-51 206.8 544 35.5
vmacro14301 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 8.2e-48 195.7 195 57.9
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 2.4e-47 194.1 413 37.5
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 7.0e-47 192.6 415 36.1
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.0e-46 191.0 229 57.6
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 7.7e-46 189.1 416 37.3
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 6.5e-45 186.0 154 70.1
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 6.5e-45 186.0 486 36.8
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.5e-44 184.9 364 39.3
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 3.2e-44 183.7 486 36.6
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 4.2e-44 183.3 526 28.7
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.6e-43 180.3 412 33.0
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.4e-42 178.3 422 36.5
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 3.0e-42 177.2 378 37.0
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 1.3e-40 171.8 427 33.5
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 4.8e-40 169.9 361 35.7
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 4.8e-40 169.9 407 35.4
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 8.3e-40 169.1 140 67.9
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.4e-39 168.3 365 37.3
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.4e-39 168.3 508 33.5
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 2.4e-39 167.5 317 40.4
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 3.1e-39 167.2 427 32.1
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 2.0e-38 164.5 123 73.2
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.5e-38 163.3 306 38.9
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 4.5e-38 163.3 203 50.7
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 7.7e-38 162.5 399 35.8
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-37 161.8 329 38.3
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 1.3e-37 161.8 126 68.3
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.3e-37 161.8 391 34.5
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.7e-37 161.4 306 38.6
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.7e-37 161.4 200 58.0
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 2.3e-37 161.0 428 32.9
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 5.0e-37 159.8 479 33.4
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 6.5e-37 159.5 144 66.0
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 2.5e-36 157.5 414 35.0
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.8e-34 151.4 320 35.3
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 2.3e-34 151.0 503 31.8
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 4.0e-34 150.2 442 30.3
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 6.8e-34 149.4 462 29.7
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 8.9e-34 149.1 143 60.8
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.2e-33 148.7 325 36.6
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.5e-33 148.3 137 65.0
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 2.0e-33 147.9 142 62.0
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 2.0e-33 147.9 176 57.4
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.4e-33 146.7 142 62.0
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 5.7e-33 146.4 143 58.0
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 9.8e-33 145.6 312 37.5
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 2.2e-32 144.4 119 68.9
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 2.2e-32 144.4 119 68.9
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.8e-32 144.1 417 31.9
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 4.9e-32 143.3 187 43.9
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 6.3e-32 142.9 119 68.9
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 6.3e-32 142.9 119 68.9
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 6.3e-32 142.9 119 68.9
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 8.3e-32 142.5 405 33.3
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 2.4e-31 141.0 153 58.2
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 2.4e-31 141.0 208 47.1
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 2.4e-31 141.0 121 65.3
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 3.1e-31 140.6 419 30.1
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 4.1e-31 140.2 153 57.5
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 4.1e-31 140.2 504 29.6
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.2e-30 138.7 186 46.2
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 2.0e-30 137.9 450 29.3
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 2.7e-30 137.5 479 30.3
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.5e-30 136.7 121 65.3
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 4.5e-30 136.7 161 53.4
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 4.5e-30 136.7 416 31.5
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.9e-30 136.3 479 30.1
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 5.9e-30 136.3 124 62.9
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 5.9e-30 136.3 397 32.5
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 1.0e-29 135.6 143 58.0
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.3e-29 135.2 397 31.2
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.3e-29 135.2 312 36.5
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 2.3e-29 134.4 311 35.4
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 5.0e-29 133.3 151 55.6
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 6.6e-29 132.9 212 43.4
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 1.5e-28 131.7 423 32.2
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 1.9e-28 131.3 122 63.9
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.9e-28 131.3 492 29.3
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 3.3e-28 130.6 431 30.2
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 7.3e-28 129.4 447 29.5
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 9.5e-28 129.0 153 56.2
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.6e-27 128.3 397 32.7
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.6e-27 128.3 415 30.1
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.1e-27 127.9 153 56.2
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 2.0e-25 121.3 82 68.3
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 3.4e-25 120.6 313 35.1
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 4.4e-25 120.2 150 43.3
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 9.8e-25 119.0 303 35.0
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.7e-24 118.2 157 41.4
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.2e-24 117.9 122 57.4
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 2.2e-24 117.9 125 60.0
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.9e-24 116.7 136 41.2
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 4.9e-24 116.7 82 64.6
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 4.9e-24 116.7 150 38.7
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 6.4e-24 116.3 438 28.8
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 6.4e-24 116.3 140 53.6
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.1e-23 115.5 113 66.4
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 2.4e-23 114.4 358 29.3
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 2.4e-23 114.4 95 60.0
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.2e-23 114.0 147 54.4
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 5.4e-23 113.2 136 39.7
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 5.4e-23 113.2 130 55.4
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 9.2e-23 112.5 138 41.3
CSS0028132 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.2e-22 112.1 225 34.2
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.2e-22 112.1 108 48.1
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.2e-22 112.1 99 69.7
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.7e-22 110.9 371 32.6
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 4.6e-22 110.2 130 56.2
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 6.0e-22 109.8 328 33.5
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 1.0e-21 109.0 144 54.9
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 1.0e-21 109.0 155 48.4
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.7e-21 108.2 140 40.7
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.7e-21 108.2 139 41.7
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.7e-21 108.2 157 45.9
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 3.0e-21 107.5 139 51.8
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 3.9e-21 107.1 121 43.8
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 5.0e-21 106.7 71 64.8
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 1.1e-20 105.5 68 70.6
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.1e-20 105.5 222 32.9
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.9e-20 104.8 130 53.1
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.3e-20 103.6 148 48.0
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 7.3e-20 102.8 118 42.4
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.2e-19 102.1 501 24.2
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 2.1e-19 101.3 146 46.6
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 2.8e-19 100.9 96 64.6
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 8.0e-19 99.4 315 30.8
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 8.9e-18 95.9 152 44.1
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 1.2e-17 95.5 109 56.0
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 2.0e-17 94.7 107 42.1
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 4.4e-17 93.6 138 48.6
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 1.3e-16 92.0 118 51.7
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 2.2e-16 91.3 154 40.9
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 8.3e-16 89.4 130 39.2
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 8.3e-16 89.4 90 63.3
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.9e-15 88.2 148 35.1
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.9e-15 88.2 159 34.6
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 4.1e-15 87.0 138 45.7
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.6e-14 85.1 64 56.2
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 2.1e-14 84.7 105 45.7
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 2.7e-14 84.3 94 39.4
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 3.5e-14 84.0 117 44.4
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 3.5e-14 84.0 140 36.4
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 3.5e-14 84.0 117 48.7
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 7.8e-14 82.8 140 45.0
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 6.6e-13 79.7 507 22.7
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 8.6e-13 79.3 418 25.6
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 7.3e-12 76.3 508 22.2
Lj2A839T58 Lonicera japonica HOM05D003229 ORTHO05D003835 2.1e-11 74.7 167 34.1
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 3.6e-11 73.9 120 35.8
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 4.7e-11 73.6 129 34.1
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 1.8e-10 71.6 147 32.7
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 5.8e-09 66.6 127 33.9
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 5.8e-09 66.6 127 33.9
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 5.8e-09 66.6 127 33.9
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 5.8e-09 66.6 96 35.4
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 7.5e-09 66.2 77 39.0
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.9e-08 64.3 57 47.4
CAN.G2071.4 Capsicum annuum HOM05D003229 ORTHO05D003835 3.7e-08 63.9 82 43.9
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 4.9e-08 63.5 117 31.6
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 1.1e-07 62.4 50 48.0
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.4e-07 61.2 57 43.9
CAN.G10408.1 Capsicum annuum HOM05D003229 ORTHO05D003835 4.1e-07 60.5 72 44.4
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 2.7e-06 57.8 111 34.2
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.5e-06 57.4 102 34.3


User provided reference genes

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