Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 6.3e-154 547.4 269 100.0
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 6.5e-151 537.3 269 97.8
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 2.9e-138 495.4 269 88.5
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.2e-137 491.9 269 87.7
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.2e-137 491.9 269 87.7
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 4.1e-137 491.5 269 87.7
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.6e-136 489.6 268 86.2
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 7.8e-136 487.3 269 86.2
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.3e-135 486.5 267 86.9
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.9e-135 485.0 269 86.6
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.1e-134 483.4 269 86.6
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.5e-134 483.0 269 86.2
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.9e-134 482.6 269 85.9
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 7.3e-134 480.7 269 85.9
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.2e-133 479.9 263 86.7
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 2.1e-133 479.2 268 85.4
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 85.1
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.8e-132 476.1 269 84.8
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 4.0e-132 474.9 270 84.8
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 83.6
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 82.9
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 84.0
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.0e-131 472.6 269 82.9
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.6e-131 472.2 269 83.3
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.4e-131 471.9 269 82.9
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 5.8e-131 471.1 269 83.3
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 9.8e-131 470.3 269 83.3
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 83.6
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 82.9
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.7e-130 469.5 269 83.3
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 2.2e-130 469.2 270 84.1
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 2.2e-130 469.2 269 82.5
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 4.9e-130 468.0 271 81.5
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 4.9e-130 468.0 306 76.5
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 1.1e-129 466.8 266 82.0
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 82.5
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.4e-129 465.7 271 82.3
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 3.2e-129 465.3 269 82.5
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.1e-129 464.9 271 81.2
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 4.1e-129 464.9 269 81.8
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 82.2
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 81.8
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 7.0e-129 464.2 269 81.8
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-128 463.0 269 81.4
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 1.6e-128 463.0 269 80.3
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 2.0e-128 462.6 269 82.2
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 2.7e-128 462.2 269 82.5
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 3.5e-128 461.8 269 82.2
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.5e-128 461.8 269 82.2
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 7.8e-128 460.7 269 81.4
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 7.8e-128 460.7 269 81.4
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 81.8
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 81.8
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 3.9e-127 458.4 269 80.3
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 3.9e-127 458.4 269 81.0
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 5.0e-127 458.0 269 79.9
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 6.6e-127 457.6 269 81.0
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 6.6e-127 457.6 269 80.7
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.1e-126 456.8 274 80.7
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.5e-126 456.4 269 81.0
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.9e-126 456.1 270 81.1
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.9e-126 456.1 269 80.7
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.9e-126 456.1 269 79.6
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 2.5e-126 455.7 270 81.5
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 2.5e-126 455.7 269 79.9
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.3e-126 455.3 275 80.4
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 5.6e-126 454.5 270 81.5
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-126 454.1 269 80.7
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.5e-126 453.8 275 80.0
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-125 453.0 275 80.0
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 2.1e-125 452.6 267 79.8
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 4.7e-125 451.4 269 81.0
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 4.7e-125 451.4 267 78.7
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 6.2e-125 451.1 269 77.0
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.1e-124 450.3 270 80.7
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-124 449.9 269 80.7
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.8e-124 449.5 281 76.5
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.8e-124 449.5 270 79.3
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-124 449.1 269 77.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.3e-124 449.1 269 79.2
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 1.2e-123 446.8 269 79.6
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.5e-123 446.4 275 81.1
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 3.4e-123 445.3 269 77.3
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 5.8e-123 444.5 269 77.7
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 9.8e-123 443.7 269 76.6
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.3e-122 443.4 269 76.2
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 1.3e-122 443.4 268 79.1
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.7e-122 443.0 269 76.6
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 79.9
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.2e-122 442.6 271 79.0
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 80.7
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 6.4e-122 441.0 269 78.8
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 8.3e-122 440.7 269 76.2
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.4e-121 439.9 286 76.2
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 3.2e-121 438.7 269 79.2
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 9.2e-121 437.2 268 76.5
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 3.5e-120 435.3 269 78.8
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 6.0e-120 434.5 252 83.7
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.3e-119 433.3 269 75.5
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 2.3e-119 432.6 269 78.1
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 3.0e-119 432.2 269 78.8
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 3.0e-119 432.2 261 77.0
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 5.1e-119 431.4 269 78.4
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 6.2e-117 424.5 269 75.5
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 2.3e-116 422.5 269 78.1
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 3.1e-116 422.2 267 74.5
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-115 420.2 269 76.2
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 1.2e-115 420.2 265 75.8
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-115 419.9 244 82.0
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-115 419.9 269 77.3
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 4.4e-115 418.3 269 75.8
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 9.9e-115 417.2 269 73.2
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 3.8e-114 415.2 268 70.5
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 6.4e-114 414.5 268 70.5
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 71.4
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.4e-113 411.4 269 75.8
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.1e-112 409.5 269 72.5
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 6.0e-112 407.9 269 71.0
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 3.9e-111 405.2 269 75.1
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.1e-109 399.4 269 69.9
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 6.2e-109 397.9 269 72.1
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-108 397.1 270 71.5
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-108 397.1 270 71.5
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.1e-108 397.1 269 69.9
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-108 396.7 276 69.6
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 1.8e-108 396.4 266 70.7
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-108 396.0 276 69.9
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.4e-107 392.1 276 69.6
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.8e-107 391.3 271 69.4
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.9e-107 390.6 272 72.1
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 2.9e-106 389.0 271 69.0
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-105 387.1 271 68.6
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.9e-105 386.3 270 67.0
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.6e-104 383.3 236 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.6e-104 383.3 270 66.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.6e-104 383.3 235 78.7
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 2.7e-104 382.5 268 66.8
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 4.6e-104 381.7 269 66.5
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.7e-103 379.8 271 67.2
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 2.5e-102 375.9 270 67.4
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 7.3e-102 374.4 212 83.5
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 3.6e-101 372.1 270 67.0
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 6.2e-101 371.3 270 64.8
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 6.2e-101 371.3 271 67.2
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 8.4e-98 360.9 271 64.9
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 7.9e-96 354.4 197 87.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.3e-94 348.6 211 78.7
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.3e-93 347.1 248 65.7
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 3.4e-91 339.0 217 76.5
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 4.9e-90 335.1 295 58.3
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.9e-87 325.5 189 80.4
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 4.3e-86 322.0 186 81.2
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 6.9e-76 288.1 270 53.3
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.5e-65 253.1 181 72.4
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 4.2e-65 252.3 189 66.7
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 6.3e-61 238.4 143 81.8
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-56 223.8 133 77.4
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 6.1e-56 221.9 270 43.0
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.7e-53 213.8 133 72.9
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 6.3e-53 211.8 267 43.1
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-52 210.7 188 62.2
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.1e-41 174.5 269 41.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.0e-38 163.7 275 36.7
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 1.3e-34 151.0 82 86.6
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 6.5e-34 148.7 88 80.7
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-33 147.9 129 60.5
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 4.2e-33 146.0 77 89.6
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 4.0e-31 139.4 109 65.1
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.6e-26 122.1 68 83.8
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.0e-23 114.8 69 78.3
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 2.6e-22 110.2 108 54.6
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 7.5e-22 108.6 67 70.1
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.3e-17 93.2 82 57.3
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.8e-15 87.4 60 68.3
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 2.3e-15 87.0 49 79.6
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 2.3e-15 87.0 49 79.6
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 1.9e-12 77.4 65 56.9
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.5e-09 67.8 57 57.9
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 2.5e-09 67.0 57 56.1
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.7e-08 62.8 38 71.1
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 3.1e-07 60.1 50 58.0
AUR62040596 Chenopodium quinoa HOM05D003837 ORTHO05D009742 9.9e-06 55.1 72 47.2


User provided reference genes

Program Settings