Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.5e-118 429.5 214 100.0
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.8e-80 302.4 217 70.5
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.3e-80 301.2 217 71.4
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 8.2e-80 300.8 219 69.9
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 1.0e-77 293.9 215 71.6
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.5e-77 290.8 212 71.7
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 9.4e-76 287.3 215 70.7
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.2e-75 287.0 215 67.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.0e-74 283.9 217 69.1
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 4.4e-73 278.5 205 68.3
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 1.3e-72 276.9 221 66.1
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.3e-72 274.6 215 63.3
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.4e-71 273.5 222 64.4
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 1.8e-71 273.1 215 66.5
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 4.1e-71 271.9 211 65.4
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 4.1e-71 271.9 220 65.9
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 9.1e-71 270.8 216 65.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 9.1e-71 270.8 216 65.3
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.6e-70 270.0 206 66.0
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.6e-70 270.0 216 64.8
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.6e-70 269.2 224 62.1
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 4.5e-70 268.5 215 63.7
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 4.5e-70 268.5 206 66.0
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 5.9e-70 268.1 215 64.2
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 7.7e-70 267.7 215 63.3
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.7e-70 267.7 205 64.9
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.3e-69 266.9 219 65.3
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.7e-69 266.5 224 61.6
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.2e-69 266.2 229 62.0
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.9e-69 265.8 215 66.0
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 8.5e-69 264.2 216 65.7
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.1e-68 263.8 213 65.3
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.9e-68 263.1 217 64.5
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 2.5e-68 262.7 203 65.0
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 5.5e-68 261.5 215 62.3
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 5.5e-68 261.5 207 64.3
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 7.2e-68 261.2 205 63.9
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.1e-67 259.6 205 64.9
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.7e-67 259.2 215 63.3
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 8.0e-67 257.7 217 61.8
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.0e-66 257.3 206 62.6
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.4e-66 256.9 202 62.9
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.8e-66 256.5 212 62.7
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.8e-66 256.5 215 60.9
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.3e-66 256.1 226 60.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 4.0e-66 255.4 219 63.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 5.2e-66 255.0 212 62.3
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 6.7e-66 254.6 212 62.7
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 8.8e-66 254.2 212 62.7
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 1.1e-65 253.8 217 61.8
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.5e-65 253.4 214 58.4
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.5e-65 253.4 212 61.8
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 2.6e-65 252.7 212 61.8
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.6e-65 252.7 209 62.7
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.6e-65 252.7 215 58.6
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.6e-65 252.7 207 63.3
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 4.4e-65 251.9 211 59.7
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 7.5e-65 251.1 213 58.7
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.7e-64 250.0 206 60.2
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 2.2e-64 249.6 219 60.7
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.2e-64 249.6 212 60.8
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 2.8e-64 249.2 211 59.7
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 2.8e-64 249.2 202 61.9
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 4.8e-64 248.4 221 61.5
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 6.3e-64 248.1 211 59.7
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 8.2e-64 247.7 214 59.3
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 8.2e-64 247.7 209 59.8
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 8.2e-64 247.7 215 60.0
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 8.2e-64 247.7 212 60.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 1.1e-63 247.3 208 61.1
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-63 247.3 211 60.2
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.1e-63 247.3 203 62.6
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.4e-63 246.9 211 59.7
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-63 246.9 213 60.6
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.8e-63 246.5 213 60.1
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.8e-63 246.5 204 61.8
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 5.3e-63 245.0 204 60.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 7.0e-63 244.6 212 60.4
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 9.1e-63 244.2 212 60.4
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.6e-62 243.4 212 58.5
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 1.6e-62 243.4 216 60.2
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.0e-62 243.0 200 60.5
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 2.7e-62 242.7 203 62.1
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 4.5e-62 241.9 205 61.5
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 5.9e-62 241.5 217 58.5
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 5.9e-62 241.5 211 60.2
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 5.9e-62 241.5 204 60.8
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 5.9e-62 241.5 205 59.5
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.2e-61 239.6 204 58.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 5.0e-61 238.4 214 58.9
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 8.5e-61 237.7 205 60.0
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.1e-60 237.3 215 58.1
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.5e-60 236.9 205 58.5
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 1.9e-60 236.5 205 62.4
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.9e-60 236.5 208 61.1
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 4.2e-60 235.3 212 60.4
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.5e-60 235.0 211 59.7
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.5e-60 235.0 211 59.2
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 7.2e-60 234.6 211 59.2
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 9.4e-60 234.2 208 60.1
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 9.4e-60 234.2 211 59.2
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-58 230.3 202 58.4
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.0e-57 226.5 215 56.7
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.6e-57 226.1 217 57.6
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 3.4e-57 225.7 195 62.1
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.4e-57 225.7 205 57.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.4e-57 225.3 143 74.8
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 5.7e-57 224.9 213 56.8
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 1.8e-55 219.9 218 55.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.8e-55 219.9 206 55.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 9.1e-55 217.6 205 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.2e-54 217.2 202 55.9
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.9e-54 214.9 204 56.9
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.3e-53 213.8 192 57.3
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 2.5e-52 209.5 186 58.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 3.2e-52 209.1 188 58.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 3.6e-51 205.7 216 50.9
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.6e-51 205.7 201 54.7
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 1.4e-50 203.8 222 50.5
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 1.8e-50 203.4 215 54.4
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 9.8e-49 197.6 133 69.2
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.8e-48 196.1 137 67.9
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 3.7e-48 195.7 224 51.3
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.3e-45 186.4 125 70.4
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 1.1e-44 184.1 125 67.2
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 3.3e-44 182.6 112 74.1
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 4.7e-43 178.7 214 50.0
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 8.0e-43 177.9 193 54.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 8.9e-42 174.5 156 59.0
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.4e-41 172.6 221 44.8
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 2.2e-40 169.9 188 53.7
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 8.3e-40 167.9 115 67.0
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 7.0e-39 164.9 206 46.6
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.2e-38 164.1 191 49.2
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.2e-38 164.1 226 45.6
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.6e-38 162.2 113 67.3
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.4e-34 150.6 166 48.8
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 1.3e-32 144.1 199 46.2
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.3e-32 144.1 185 49.7
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.2e-30 137.5 115 53.9
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 1.7e-29 133.7 218 40.4
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.6e-27 127.1 172 51.7
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.8e-26 123.6 62 82.3
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 8.3e-24 114.8 114 55.3
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 7.8e-22 108.2 145 43.4
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 7.8e-22 108.2 145 43.4
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 7.8e-22 108.2 145 43.4
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.0e-21 107.8 116 49.1
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 8.6e-21 104.8 122 51.6
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.1e-19 100.1 146 46.6
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.6e-17 93.2 64 64.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.2e-11 74.3 42 66.7
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.1e-11 73.6 51 62.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.4e-10 70.9 120 34.2
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.8e-10 70.5 104 41.3
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.8e-10 70.5 73 50.7
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.8e-10 70.5 67 59.7
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.1e-10 69.7 45 66.7
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 4.0e-10 69.3 176 34.7
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.0e-09 67.0 45 62.2
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 4.2e-07 59.3 28 85.7
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 5.4e-07 58.9 91 47.3
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 3.5e-06 56.2 100 44.0


User provided reference genes

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