Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.7e-154 548.1 269 100.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.1e-150 536.6 269 97.8
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 2.0e-139 499.2 269 89.2
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.3e-138 496.5 269 88.8
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.4e-138 494.2 269 88.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.4e-138 494.2 269 88.1
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.1e-137 493.4 268 86.9
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 7.0e-137 490.7 269 86.6
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 7.0e-137 490.7 267 87.6
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.2e-136 490.0 269 87.7
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 3.5e-136 488.4 269 87.7
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 4.6e-136 488.0 269 87.4
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 7.8e-136 487.3 269 86.6
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 2.3e-135 485.7 269 87.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.9e-134 482.6 263 87.1
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 3.3e-134 481.9 268 85.8
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 7.3e-134 480.7 269 85.9
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.2e-133 479.9 269 85.5
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 2.8e-133 478.8 270 85.6
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 83.6
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 84.8
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.8e-132 476.1 269 84.0
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-132 475.7 269 83.6
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 3.1e-132 475.3 269 84.0
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 83.3
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 6.8e-132 474.2 269 84.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 8.9e-132 473.8 269 84.4
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 8.9e-132 473.8 269 83.6
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.2e-131 473.4 269 84.0
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 83.3
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 3.4e-131 471.9 306 77.1
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 3.4e-131 471.9 269 83.3
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 5.8e-131 471.1 266 82.7
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 9.8e-131 470.3 271 81.9
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 83.3
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 82.5
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 82.5
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 4.9e-130 468.0 269 82.5
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.9e-130 468.0 271 82.7
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 6.4e-130 467.6 269 82.9
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 8.3e-130 467.2 271 81.5
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 82.2
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.1e-129 466.8 270 84.1
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 81.0
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 82.5
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.9e-129 466.1 269 83.3
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 2.4e-129 465.7 269 82.9
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-129 465.7 269 82.9
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 82.2
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.2e-129 463.8 269 82.5
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 9.2e-129 463.8 269 82.5
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.6e-128 463.0 269 81.8
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 2.7e-128 462.2 269 80.7
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 2.7e-128 462.2 269 81.8
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 4.6e-128 461.5 269 81.4
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 7.8e-128 460.7 274 81.4
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.0e-127 460.3 269 81.8
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.0e-127 460.3 269 82.2
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 81.4
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.7e-127 459.5 269 80.7
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-127 459.1 275 81.1
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 3.9e-127 458.4 269 79.9
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.9e-127 458.4 269 81.4
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 5.0e-127 458.0 269 80.3
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 5.0e-127 458.0 269 80.7
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.6e-127 457.6 275 80.7
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-126 456.8 275 80.7
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.3e-126 455.3 270 81.5
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 7.3e-126 454.1 270 81.1
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 7.3e-126 454.1 270 81.5
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.5e-126 453.8 269 81.0
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.2e-125 453.4 281 77.2
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.2e-125 453.4 270 80.0
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 6.2e-125 451.1 269 80.3
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 8.1e-125 450.7 267 79.8
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.1e-124 450.3 275 81.8
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.4e-124 449.9 270 80.7
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.4e-124 449.9 269 81.0
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.8e-124 449.5 267 78.7
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.1e-124 448.7 269 77.0
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 8.9e-124 447.2 268 79.5
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.2e-123 446.8 269 77.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.2e-123 446.8 269 79.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.5e-123 446.4 269 81.4
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.5e-123 446.4 271 79.7
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 5.8e-123 444.5 269 79.6
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.7e-122 443.0 269 77.3
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 77.7
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 79.9
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 4.9e-122 441.4 269 76.6
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 6.4e-122 441.0 269 76.2
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.1e-121 440.3 269 76.2
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.9e-121 439.5 286 76.2
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 3.2e-121 438.7 269 79.6
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 3.2e-121 438.7 269 79.6
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 5.4e-121 438.0 269 75.8
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 79.2
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 2.7e-120 435.6 252 83.7
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 4.6e-120 434.9 268 76.1
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.0e-119 432.2 269 75.8
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 1.1e-118 430.3 261 77.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 1.5e-118 429.9 269 78.1
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 78.4
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 5.6e-118 427.9 269 76.2
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.2e-117 424.5 269 78.8
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 8.1e-117 424.1 244 82.8
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 8.1e-117 424.1 269 77.0
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 1.1e-116 423.7 265 76.2
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 77.7
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 4.0e-116 421.8 269 76.6
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.0e-115 419.5 267 74.2
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 71.7
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-114 414.8 269 76.2
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 4.9e-114 414.8 269 73.2
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.1e-113 413.7 268 70.9
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 1.4e-113 413.3 268 70.5
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 3.2e-113 412.1 269 76.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 1.2e-112 410.2 269 71.4
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.0e-111 407.1 269 72.5
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 4.3e-110 401.7 269 72.9
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-110 401.0 270 72.2
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-110 401.0 270 72.2
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.6e-110 400.6 276 70.3
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 1.2e-109 400.2 266 71.1
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-109 399.8 276 70.7
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.1e-108 397.1 269 69.9
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-108 396.0 276 70.3
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-108 395.2 271 70.1
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.2e-107 393.7 269 69.5
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 2.0e-107 392.9 271 69.7
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.6e-107 391.0 271 69.4
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.3e-106 390.2 270 67.8
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-106 389.0 272 72.1
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.9e-105 386.3 269 67.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 2.4e-105 386.0 236 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.2e-105 385.6 270 67.0
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.4e-105 384.8 268 67.2
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.2e-104 383.6 271 67.9
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 3.5e-104 382.1 235 75.3
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-102 376.3 270 67.4
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-101 373.2 212 83.5
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 1.6e-101 373.2 270 67.4
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 2.8e-101 372.5 271 67.5
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 4.8e-101 371.7 270 65.2
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 5.8e-99 364.8 271 65.7
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 7.9e-96 354.4 197 87.8
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.5e-94 350.1 248 66.1
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 9.6e-94 347.4 211 78.7
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 2.8e-93 345.9 217 77.9
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.3e-90 337.0 297 58.2
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.1e-87 325.1 189 80.4
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 4.3e-86 322.0 186 81.7
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.6e-77 293.5 270 54.4
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.2e-65 252.7 181 71.8
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.2e-64 250.8 189 66.7
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 4.4e-62 242.3 143 82.5
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-56 223.4 133 77.4
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.0e-54 216.9 270 42.6
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 7.4e-54 214.9 188 62.8
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 2.2e-53 213.4 133 72.9
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 2.6e-51 206.5 267 42.3
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 5.0e-42 175.6 269 41.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.3e-37 161.0 275 36.4
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 8.6e-34 148.3 129 60.5
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 8.6e-34 148.3 82 85.4
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 1.9e-33 147.1 88 79.5
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 5.5e-33 145.6 77 89.6
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 2.8e-32 143.3 109 66.1
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.5e-25 120.2 68 82.4
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.6e-25 119.0 69 79.7
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 2.3e-23 113.6 108 55.6
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 3.4e-22 109.8 67 71.6
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.9e-17 94.0 68 66.2
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 8.0e-16 88.6 60 70.0
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 6.8e-15 85.5 49 77.6
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 6.8e-15 85.5 49 77.6
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 2.9e-13 80.1 65 60.0
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.7e-10 70.9 62 59.7
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 3.0e-10 70.1 62 58.1
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.6e-08 64.3 38 73.7
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 3.6e-08 63.2 55 60.0


User provided reference genes

Program Settings