Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 0.0e+00 1084.3 549 100.0
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.8e-216 756.1 551 74.4
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.4e-203 713.4 543 70.2
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.4e-203 713.4 543 70.2
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 4.0e-203 711.8 544 69.1
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 1.5e-202 709.9 544 69.7
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 3.1e-200 702.2 546 68.3
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 3.2e-197 692.2 554 66.8
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 3.4e-194 682.2 544 67.5
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 3.1e-192 675.6 596 63.9
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 9.1e-192 674.1 531 67.0
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 9.1e-192 674.1 540 66.1
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 1.2e-191 673.7 543 65.6
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 1.6e-191 673.3 543 65.9
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 2.7e-191 672.5 540 66.3
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 5.9e-191 671.4 540 65.9
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 1.0e-190 670.6 561 64.0
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 1.0e-190 670.6 540 66.1
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 4.2e-189 665.2 549 65.0
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 7.2e-189 664.5 548 64.8
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 2.1e-188 662.9 543 64.8
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 4.7e-188 661.8 546 65.4
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 6.1e-188 661.4 574 63.1
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 4.0e-187 658.7 540 64.6
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 6.8e-187 657.9 543 64.8
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 8.9e-187 657.5 543 65.2
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 1.2e-186 657.1 548 65.3
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 9.8e-186 654.1 544 64.7
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 1.7e-185 653.3 555 63.2
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 6.3e-185 651.4 549 64.3
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 1.1e-184 650.6 547 64.4
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 1.4e-184 650.2 547 64.7
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 1.8e-184 649.8 546 64.5
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 5.4e-184 648.3 550 64.0
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.0e-184 647.9 548 64.2
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 7.0e-184 647.9 548 64.2
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 7.0e-184 647.9 534 65.0
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 7.0e-184 647.9 548 63.3
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 9.2e-184 647.5 554 63.7
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.0e-183 646.4 548 64.1
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 2.7e-183 646.0 551 62.8
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 2.7e-183 646.0 555 62.9
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 2.7e-183 646.0 545 63.1
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 3.5e-183 645.6 552 64.7
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 3.5e-183 645.6 555 62.5
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 3.5e-183 645.6 548 62.8
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 4.5e-183 645.2 548 63.5
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 4.5e-183 645.2 564 62.9
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 1.0e-182 644.0 549 63.2
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 1.3e-182 643.7 552 64.5
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.3e-182 643.7 548 64.1
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 1.7e-182 643.3 547 64.0
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.3e-182 642.9 555 62.0
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 2.3e-182 642.9 545 63.7
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 3.8e-182 642.1 548 63.3
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 5.0e-182 641.7 550 63.3
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 6.6e-182 641.3 549 63.6
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 6.6e-182 641.3 555 62.5
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 6.6e-182 641.3 538 65.1
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.6e-182 641.3 555 62.0
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 8.6e-182 641.0 541 64.1
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 1.1e-181 640.6 546 63.7
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 1.5e-181 640.2 542 63.7
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 2.5e-181 639.4 547 64.0
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 3.3e-181 639.0 542 63.5
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 4.3e-181 638.6 545 62.9
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 4.3e-181 638.6 550 62.9
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 2.1e-180 636.3 548 63.3
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 2.8e-180 636.0 549 63.0
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 6.1e-180 634.8 544 64.5
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 4.0e-179 632.1 546 62.3
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 2.0e-178 629.8 568 61.6
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 2.6e-178 629.4 540 62.6
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.6e-178 629.4 533 64.7
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 4.4e-178 628.6 536 63.8
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 2.2e-177 626.3 536 63.8
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 3.7e-177 625.5 520 63.8
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 6.4e-177 624.8 552 63.0
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.4e-177 624.8 554 61.0
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 8.3e-177 624.4 552 62.9
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 1.4e-176 623.6 567 61.0
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 1.4e-176 623.6 567 61.0
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 2.4e-176 622.9 554 61.0
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 4.1e-176 622.1 534 62.7
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.1e-176 622.1 554 61.0
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 5.4e-176 621.7 537 62.9
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 9.2e-176 620.9 537 62.8
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 1.0e-174 617.5 542 62.0
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 1.3e-174 617.1 536 62.9
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 1.7e-174 616.7 548 60.9
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 3.9e-174 615.5 547 60.7
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 8.0e-172 607.8 544 61.0
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 1.4e-171 607.1 544 61.2
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 3.1e-171 605.9 545 60.6
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 4.0e-171 605.5 545 60.4
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 5.2e-171 605.1 541 60.4
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 6.8e-171 604.7 545 60.4
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 2.6e-170 602.8 545 60.4
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 7.5e-170 601.3 545 59.8
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 9.8e-170 600.9 544 60.3
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 2.9e-169 599.4 544 59.9
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 2.9e-169 599.4 543 59.5
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 1.9e-168 596.7 544 60.1
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 1.6e-167 593.6 544 59.6
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 3.5e-167 592.4 544 60.1
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 3.5e-167 592.4 543 58.4
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 6.0e-167 591.7 543 58.6
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 7.8e-167 591.3 541 59.3
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 5.6e-165 585.1 543 57.5
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 5.6e-165 585.1 543 57.5
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 9.5e-165 584.3 544 57.7
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 4.7e-164 582.0 543 57.6
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 4.7e-164 582.0 477 65.4
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 3.1e-163 579.3 562 58.0
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 6.8e-163 578.2 574 57.5
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 1.5e-162 577.0 545 58.9
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 5.8e-162 575.1 527 59.4
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 2.9e-161 572.8 552 57.6
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 2.9e-161 572.8 541 58.2
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 1.1e-160 570.9 544 56.8
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 1.7e-158 563.5 524 58.6
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 3.9e-158 562.4 546 56.8
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 3.6e-156 555.8 547 55.8
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 8.1e-156 554.7 523 58.1
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.4e-155 553.9 546 56.6
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.5e-154 550.4 498 59.8
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 1.4e-152 543.9 511 57.7
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 7.8e-151 538.1 537 54.4
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 1.0e-150 537.7 504 57.7
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 2.3e-150 536.6 585 53.8
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 2.1e-148 530.0 547 55.6
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 8.1e-148 528.1 543 57.3
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 3.4e-146 522.7 314 84.4
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 6.4e-145 518.5 521 53.6
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 3.2e-144 516.2 503 55.3
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 7.8e-143 511.5 483 58.4
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 1.5e-141 507.3 316 80.4
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 2.0e-138 496.9 465 57.8
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 3.0e-134 483.0 433 61.4
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 5.1e-134 482.3 488 55.5
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 3.4e-130 469.5 493 54.2
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.1e-123 448.0 516 51.4
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 1.1e-104 384.8 506 43.9
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 3.9e-102 376.3 371 57.4
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 1.5e-101 374.4 366 56.8
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 1.0e-94 351.7 509 40.9
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 3.3e-93 346.7 410 50.0
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 4.5e-90 336.3 501 40.1
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 5.5e-88 329.3 390 48.2
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 8.6e-73 278.9 254 59.1
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 1.2e-71 275.0 545 34.7
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 6.1e-71 272.7 257 57.6
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 1.5e-64 251.5 376 42.8
RcHm_v2.0_Chr1g0352651 Rosa chinensis HOM05D003871 ORTHO05D004621 2.0e-58 231.1 134 84.3
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 2.4e-51 207.6 425 36.7
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 5.1e-49 199.9 155 69.0
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 6.2e-47 193.0 263 40.3
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-41 175.3 123 69.9
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.0e-38 163.7 142 58.5
Oeu038681.1 Olea europaea HOM05D003871 ORTHO05D004621 6.8e-38 162.9 109 70.6
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 2.0e-37 161.4 574 26.1
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.0e-37 161.4 142 56.3
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 2.7e-34 151.0 92 77.2
Hma1.2p1_0775F.1_g216560 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 1.3e-33 148.7 98 73.5
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 3.9e-33 147.1 233 40.3
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 5.1e-33 146.7 304 32.6
TAR375G0392 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.5e-32 144.4 84 84.5
BraA07t30175Z Brassica rapa HOM05D003871 ORTHO05D004621 2.1e-31 141.4 84 82.1
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 8.1e-31 139.4 253 35.6
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 3.1e-30 137.5 142 53.5
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 6.9e-30 136.3 218 35.8
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 4.4e-29 133.7 109 62.4
HPP92_007379 Vanilla planifolia HOM05D003871 ORTHO05D004621 4.9e-28 130.2 81 77.8
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 2.7e-26 124.4 374 29.1
arahy.Tifrunner.gnm1.ann1.GU6ASX Arachis hypogaea HOM05D003871 ORTHO05D004621 8.1e-23 112.8 183 39.3
BcaB02g11168 Brassica carinata HOM05D003871 ORTHO05D004621 1.0e-17 95.9 98 50.0
BcaB04g17067 Brassica carinata HOM05D003871 ORTHO05D004621 2.3e-17 94.7 98 49.0
BcaC01g03724 Brassica carinata HOM05D003871 ORTHO05D039068 1.8e-14 85.1 97 44.3
C03p23120 Brassica napus HOM05D003871 ORTHO05D032550 3.1e-14 84.3 139 38.8
BcaB08g34774 Brassica carinata HOM05D000054 ORTHO05D000286 2.6e-13 81.3 95 45.3
arahy.Tifrunner.gnm1.ann1.F39Z70 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-12 79.0 56 67.9
ATR0757G136 Amborella trichopoda HOM05D003871 ORTHO05D004621 3.0e-09 67.8 77 51.9
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 6.7e-09 66.6 252 25.4
AT3G12850 Arabidopsis thaliana HOM05D061468 ORTHO05D038599 1.1e-06 59.3 104 39.4


User provided reference genes

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