Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0152800 Rhododendron simsii HOM05D003932 ORTHO05D004546 4.7e-138 494.6 259 100.0
Rhsim03G0122200 Rhododendron simsii HOM05D020684 ORTHO05D000309 7.2e-22 108.6 102 64.7
Rhsim10G0164200 Rhododendron simsii HOM05D020684 ORTHO05D000309 9.4e-22 108.2 137 54.7
Rhsim02G0156200 Rhododendron simsii HOM05D020684 ORTHO05D000309 4.7e-21 105.9 117 57.3
GSVIVG01027495001 Vitis vinifera HOM05D003932 ORTHO05D004546 4.1e-17 92.8 152 38.2
Dinv32438 Davidia involucrata HOM05D003932 ORTHO05D004546 9.1e-17 91.7 177 37.9
Hma1.2p1_0001F.1_g001770 Hydrangea macrophylla HOM05D003932 ORTHO05D004546 1.6e-16 90.9 177 36.2
TWI59G0559 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 1.6e-16 90.9 155 36.8
Peaxi162Scf00021g01219 Petunia axillaris HOM05D003932 ORTHO05D004546 2.0e-16 90.5 177 35.0
Actinidia33434 Actinidia chinensis HOM05D003932 ORTHO05D004546 5.9e-16 89.0 174 39.7
MELO3C006135.2 Cucumis melo HOM05D003932 ORTHO05D004546 7.7e-16 88.6 158 38.0
Peaxi162Scf00021g01218 Petunia axillaris HOM05D003932 ORTHO05D004546 1.0e-15 88.2 140 40.0
Lsat_1_v5_gn_7_5540 Lactuca sativa HOM05D003932 ORTHO05D004546 1.3e-15 87.8 157 35.0
QL08p050106 Quercus lobata HOM05D003932 ORTHO05D004546 1.7e-15 87.4 178 34.8
Peaxi162Scf00021g01111 Petunia axillaris HOM05D003932 ORTHO05D004546 2.3e-15 87.0 118 44.1
Cfa004206 Carpinus fangiana HOM05D003932 ORTHO05D004546 2.9e-15 86.7 166 31.9
DCAR_020430 Daucus carota HOM05D003932 ORTHO05D004546 3.8e-15 86.3 157 36.9
Cfa004205 Carpinus fangiana HOM05D003932 ORTHO05D004546 5.0e-15 85.9 168 32.1
Lj9A578T66 Lonicera japonica HOM05D003932 ORTHO05D004546 1.5e-14 84.3 170 37.6
Lsat_1_v5_gn_7_5520 Lactuca sativa HOM05D003932 ORTHO05D004546 9.5e-14 81.6 157 32.5
PGSC0003DMG400027784 Solanum tuberosum HOM05D003932 ORTHO05D004546 1.2e-13 81.3 177 30.5
Haze_15204 Corylus avellana HOM05D003932 ORTHO05D004546 1.6e-13 80.9 166 31.3
Nitab4.5_0006421g0030 Nicotiana tabacum HOM05D003932 ORTHO05D004546 2.1e-13 80.5 179 34.6
RcHm_v2.0_Chr1g0352841 Rosa chinensis HOM05D003932 ORTHO05D004546 2.8e-13 80.1 168 33.3
GSVIVG01027494001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.8e-13 80.1 129 40.3
Solyc01g091550.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 3.6e-13 79.7 177 31.1
CAN.G170.13 Capsicum annuum HOM05D003932 ORTHO05D004546 6.1e-13 79.0 158 31.0
Sed0002580 Sechium edule HOM05D003932 ORTHO05D004546 1.0e-12 78.2 168 33.3
Sopen01g037330 Solanum pennellii HOM05D003932 ORTHO05D004546 1.0e-12 78.2 179 31.3
TWI14G0637 Tripterygium wilfordii HOM05D003932 ORTHO05D004546 1.0e-12 78.2 157 33.8
Sopen01g037320 Solanum pennellii HOM05D003932 ORTHO05D004546 1.4e-12 77.8 177 30.5
vmacro20959 Vaccinium macrocarpon HOM05D003932 ORTHO05D004546 1.8e-12 77.4 61 68.9
Haze_15203 Corylus avellana HOM05D003932 ORTHO05D004546 2.3e-12 77.0 164 31.7
CsaV3_3G009140 Cucumis sativus L. HOM05D003932 ORTHO05D004546 2.3e-12 77.0 157 35.0
Atru.chr5.430 Acer truncatum HOM05D003932 ORTHO05D004546 3.0e-12 76.6 177 28.8
Atru.chr5.428 Acer truncatum HOM05D003932 ORTHO05D004546 4.0e-12 76.3 172 26.7
Prupe.2G158100 Prunus persica HOM05D003932 ORTHO05D004546 4.0e-12 76.3 163 32.5
Solyc01g091560.2 Solanum lycopersicum HOM05D003932 ORTHO05D004546 5.2e-12 75.9 179 31.8
Gohir.A11G086400 Gossypium hirsutum HOM05D003932 ORTHO05D004546 8.9e-12 75.1 157 31.8
PGSC0003DMG400027783 Solanum tuberosum HOM05D003932 ORTHO05D004546 8.9e-12 75.1 178 30.9
Atru.chr5.429 Acer truncatum HOM05D003932 ORTHO05D004546 2.0e-11 73.9 177 28.2
DCAR_025147 Daucus carota HOM05D003932 ORTHO05D004546 2.0e-11 73.9 61 62.3
Sed0026606 Sechium edule HOM05D003932 ORTHO05D004546 2.0e-11 73.9 180 31.7
GSVIVG01027496001 Vitis vinifera HOM05D003932 ORTHO05D004546 2.0e-11 73.9 177 33.3
Oeu056332.1 Olea europaea HOM05D003932 ORTHO05D004546 2.6e-11 73.6 163 29.4
QL08p050077 Quercus lobata HOM05D003932 ORTHO05D004546 2.6e-11 73.6 152 32.2
Lalb_Chr10g0097321 Lupinus albus HOM05D003932 ORTHO05D004546 3.4e-11 73.2 136 31.6
ECA236G4160 Erigeron canadensis HOM05D003932 ORTHO05D004546 4.4e-11 72.8 169 32.5
Gorai.007G096600 Gossypium raimondii HOM05D003932 ORTHO05D004546 4.4e-11 72.8 156 30.8
MD01G1049100 Malus domestica HOM05D003932 ORTHO05D004546 4.4e-11 72.8 163 31.9
CSS0035798 Camellia sinensis var. sinensis HOM05D003932 ORTHO05D004546 5.7e-11 72.4 50 74.0
Cfa004207 Carpinus fangiana HOM05D003932 ORTHO05D004546 5.7e-11 72.4 164 31.1
FAN10G0548 Fragaria x ananassa HOM05D003932 ORTHO05D004546 7.5e-11 72.0 177 29.4
MD07G1126000 Malus domestica HOM05D003932 ORTHO05D004546 7.5e-11 72.0 171 31.6
Aqoxy7G00392 Aquilegia oxysepala HOM05D003932 ORTHO05D004546 9.8e-11 71.6 171 29.8
Ciclev10022587m.g Citrus clementina HOM05D003932 ORTHO05D004546 9.8e-11 71.6 154 30.5
Cc00_g12140 Coffea canephora HOM05D003932 ORTHO05D004546 9.8e-11 71.6 139 33.1
Gohir.D11G090600 Gossypium hirsutum HOM05D003932 ORTHO05D004546 9.8e-11 71.6 156 30.8
FvH4_7g13461 Fragaria vesca HOM05D003932 ORTHO05D004546 1.3e-10 71.2 181 29.8
QL08p050127 Quercus lobata HOM05D003932 ORTHO05D004546 2.2e-10 70.5 213 27.2
QL08p050131 Quercus lobata HOM05D003932 ORTHO05D004546 2.2e-10 70.5 61 57.4
MSTRG.28209 Avicennia marina HOM05D003932 ORTHO05D004546 4.9e-10 69.3 177 29.4
ECA236G1648 Erigeron canadensis HOM05D003932 ORTHO05D004546 4.9e-10 69.3 165 29.1
Lj1g0003765 Lotus japonicus HOM05D003932 ORTHO05D004546 4.9e-10 69.3 136 29.4
SGA_v2.0_scaffold11G05654 Striga asiatica HOM05D003932 ORTHO05D004546 6.3e-10 68.9 136 33.1
arahy.Tifrunner.gnm1.ann1.67TC14 Arachis hypogaea HOM05D003932 ORTHO05D004546 8.3e-10 68.6 173 29.5
Migut.N01424 Erythranthe guttata HOM05D003932 ORTHO05D004546 8.3e-10 68.6 147 30.6
FvH4_7g13460 Fragaria vesca HOM05D003932 ORTHO05D004546 8.3e-10 68.6 174 29.9
Potri.002G155500 Populus trichocarpa HOM05D003932 ORTHO05D004546 8.3e-10 68.6 177 33.3
RcHm_v2.0_Chr1g0352831 Rosa chinensis HOM05D003932 ORTHO05D004546 8.3e-10 68.6 177 29.4
Duzib133G0425 Durio zibethinus HOM05D003932 ORTHO05D004546 1.1e-09 68.2 174 30.5
FAN06G4428 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.1e-09 68.2 181 29.3
arahy.Tifrunner.gnm1.ann1.BEZL7V Arachis hypogaea HOM05D003932 ORTHO05D004546 1.4e-09 67.8 173 29.5
FAN10G1165 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.4e-09 67.8 174 29.9
Oeu053298.1 Olea europaea HOM05D003932 ORTHO05D004546 1.4e-09 67.8 175 27.4
TAR629G2445 Trochodendron aralioides HOM05D003932 ORTHO05D004546 1.8e-09 67.4 45 71.1
FAN06G3956 Fragaria x ananassa HOM05D003932 ORTHO05D004546 2.4e-09 67.0 174 29.3
Medtr8g032450 Medicago truncatula HOM05D003932 ORTHO05D004546 2.4e-09 67.0 50 60.0
Medtr8g433000 Medicago truncatula HOM05D003932 ORTHO05D004546 2.4e-09 67.0 50 60.0
Thecc.01G365900 Theobroma cacao HOM05D003932 ORTHO05D004546 2.4e-09 67.0 174 30.5
COL.COLO4_12605 Corchorus olitorius HOM05D003932 ORTHO05D004546 3.2e-09 66.6 47 66.0
VMungo0331G1015 Vigna mungo HOM05D003932 ORTHO05D004546 3.2e-09 66.6 139 28.1
CiPaw.02G026900 Carya illinoinensis HOM05D003932 ORTHO05D004546 4.1e-09 66.2 159 30.8
Glyma.07G075500 Glycine max HOM05D003932 ORTHO05D004546 4.1e-09 66.2 61 52.5
Glyma.18G224900 Glycine max HOM05D003932 ORTHO05D004546 4.1e-09 66.2 136 27.2
Glyma.03G015500 Glycine max HOM05D003932 ORTHO05D004546 5.4e-09 65.9 164 27.4
Hund16950 Selenicereus undatus HOM05D003932 ORTHO05D004546 5.4e-09 65.9 55 54.5
TPR.G9818 Trifolium pratense HOM05D003932 ORTHO05D004546 5.4e-09 65.9 50 58.0
MSTRG.28210 Avicennia marina HOM05D003932 ORTHO05D004546 7.0e-09 65.5 166 26.5
Prupe.2G157800 Prunus persica HOM05D003932 ORTHO05D004546 7.0e-09 65.5 64 56.2
Sed0003987 Sechium edule HOM05D003932 ORTHO05D004546 7.0e-09 65.5 157 31.2
CiPaw.02G027200 Carya illinoinensis HOM05D003932 ORTHO05D004546 9.2e-09 65.1 159 31.4
FAN01G0068 Fragaria x ananassa HOM05D003932 ORTHO05D004546 9.2e-09 65.1 181 28.7
Atru.chr5.432 Acer truncatum HOM05D003932 ORTHO05D004546 1.2e-08 64.7 130 30.0
CANSAT56G2307 Cannabis sativa HOM05D003932 ORTHO05D004546 1.2e-08 64.7 179 30.2
Manes.05G038300 Manihot esculenta HOM05D003932 ORTHO05D004546 1.2e-08 64.7 176 31.2
Psat4g153440 Pisum sativum HOM05D003932 ORTHO05D004546 1.2e-08 64.7 178 27.0
Ca_25783_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 1.6e-08 64.3 138 29.7
FAN06G0832 Fragaria x ananassa HOM05D003932 ORTHO05D004546 1.6e-08 64.3 174 28.7
PGSC0003DMG400027782 Solanum tuberosum HOM05D003932 ORTHO05D004546 1.6e-08 64.3 179 29.1
Psat4g153400 Pisum sativum HOM05D003932 ORTHO05D004546 2.0e-08 63.9 61 50.8
Glyma.07G075400 Glycine max HOM05D003932 ORTHO05D004546 2.7e-08 63.5 178 27.5
Lalb_Chr19g0127151 Lupinus albus HOM05D003932 ORTHO05D004546 2.7e-08 63.5 172 27.3
Potri.014G078900 Populus trichocarpa HOM05D003932 ORTHO05D004546 2.7e-08 63.5 170 29.4
HPP92_025613 Vanilla planifolia HOM05D003932 ORTHO05D004546 2.7e-08 63.5 155 28.4
Gohir.D08G151100 Gossypium hirsutum HOM05D003932 ORTHO05D004546 3.5e-08 63.2 132 29.5
Gorai.004G156800 Gossypium raimondii HOM05D003932 ORTHO05D004546 3.5e-08 63.2 132 29.5
SalBow5G0579 Salvia bowleyana HOM05D003932 ORTHO05D004546 3.5e-08 63.2 202 24.3
PSO782G0460 Papaver somniferum HOM05D003932 ORTHO05D004546 4.5e-08 62.8 149 27.5
SalBow5G4627 Salvia bowleyana HOM05D003932 ORTHO05D004546 4.5e-08 62.8 174 25.9
FAN01G1053 Fragaria x ananassa HOM05D003932 ORTHO05D004546 5.9e-08 62.4 174 28.7
Rhsim11G0003800 Rhododendron simsii HOM05D001453 ORTHO05D050679 5.9e-08 62.4 60 58.3
Cpa.g.sc18.210 Carica papaya HOM05D003932 ORTHO05D004546 7.8e-08 62.0 174 28.2
Eucgr.E00193 Eucalyptus grandis HOM05D003932 ORTHO05D004546 7.8e-08 62.0 162 27.2
Nitab4.5_0005423g0050 Nicotiana tabacum HOM05D003932 ORTHO05D004546 7.8e-08 62.0 48 62.5
VMungo1383G1115 Vigna mungo HOM05D003932 ORTHO05D004546 7.8e-08 62.0 173 24.3
Aa31LG10G15280 Aethionema arabicum HOM05D003932 ORTHO05D004546 1.0e-07 61.6 61 50.8
Sabra14G0057100 Salix brachista HOM05D003932 ORTHO05D004546 1.0e-07 61.6 136 33.8
AT3G61200 Arabidopsis thaliana HOM05D003932 ORTHO05D004546 1.7e-07 60.8 61 45.9
Manes.05G038400 Manihot esculenta HOM05D003932 ORTHO05D004546 1.7e-07 60.8 177 31.1
Sc23g0003150 Simmondsia chinensis HOM05D003932 ORTHO05D004546 1.7e-07 60.8 171 29.2
Sopen01g037340 Solanum pennellii HOM05D003932 ORTHO05D004546 1.7e-07 60.8 179 29.1
Zm00001eb306670 Zea mays HOM05D003932 ORTHO05D004546 1.7e-07 60.8 61 47.5
arahy.Tifrunner.gnm1.ann1.MUI9WD Arachis hypogaea HOM05D003932 ORTHO05D004546 2.9e-07 60.1 50 52.0
arahy.Tifrunner.gnm1.ann1.UY84ZS Arachis hypogaea HOM05D003932 ORTHO05D004546 2.9e-07 60.1 50 52.0
Carub.0005s2787 Capsella rubella HOM05D003932 ORTHO05D004546 2.9e-07 60.1 61 47.5
Lj3g0012135 Lotus japonicus HOM05D003932 ORTHO05D004546 3.9e-07 59.7 174 24.7
Manes.05G038500 Manihot esculenta HOM05D003932 ORTHO05D004546 3.9e-07 59.7 127 31.5
Manes.05G038600 Manihot esculenta HOM05D003932 ORTHO05D004546 3.9e-07 59.7 136 29.4
Os07g0463500 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 3.9e-07 59.7 61 49.2
EL10Ac1g00517 Beta vulgaris HOM05D003932 ORTHO05D004546 5.0e-07 59.3 50 54.0
Solyc01g091570.3 Solanum lycopersicum HOM05D003932 ORTHO05D004546 5.0e-07 59.3 179 28.5
arahy.Tifrunner.gnm1.ann1.LBI1HC Arachis hypogaea HOM05D003932 ORTHO05D004546 8.6e-07 58.5 49 51.0
BcaC02g10211 Brassica carinata HOM05D003932 ORTHO05D004546 8.6e-07 58.5 61 49.2
A04p01220 Brassica napus HOM05D003932 ORTHO05D004546 8.6e-07 58.5 61 49.2
C04p31500 Brassica napus HOM05D003932 ORTHO05D004546 8.6e-07 58.5 61 49.2
BolC4t24695H Brassica oleracea HOM05D003932 ORTHO05D004546 8.6e-07 58.5 61 49.2
BraA04t15840Z Brassica rapa HOM05D003932 ORTHO05D004546 8.6e-07 58.5 61 49.2
Nitab4.5_0005423g0070 Nicotiana tabacum HOM05D003932 ORTHO05D004546 8.6e-07 58.5 43 60.5
Ca_07852_v3 Cicer arietinum L. HOM05D003932 ORTHO05D004546 1.5e-06 57.8 46 52.2
Ah.02g122980 Amaranthus hybridus HOM05D003932 ORTHO05D004546 1.9e-06 57.4 61 42.6
AUR62022757 Chenopodium quinoa HOM05D003932 ORTHO05D004546 2.5e-06 57.0 47 55.3
CARHR171510 Cardamine hirsuta HOM05D003932 ORTHO05D004546 3.3e-06 56.6 55 49.1
AUR62022756 Chenopodium quinoa HOM05D003932 ORTHO05D004546 3.3e-06 56.6 50 50.0
arahy.Tifrunner.gnm1.ann1.NCU55Y Arachis hypogaea HOM05D003932 ORTHO05D004546 4.3e-06 56.2 49 49.0
AUR62004306 Chenopodium quinoa HOM05D003932 ORTHO05D004546 4.3e-06 56.2 50 50.0
Os07g0462700 Oryza sativa ssp. japonica HOM05D003932 ORTHO05D004546 4.3e-06 56.2 61 45.9
Phvul.010G093700 Phaseolus vulgaris HOM05D003932 ORTHO05D004546 5.6e-06 55.8 61 41.0
AL5G43470 Arabidopsis lyrata HOM05D003932 ORTHO05D004546 7.3e-06 55.5 61 44.3
Rhsim11G0090000 Rhododendron simsii HOM05D020684 ORTHO05D000309 9.5e-06 55.1 117 37.6


User provided reference genes

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