Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 3.8e-123 444.9 229 100.0
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 1.6e-94 349.7 230 79.1
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 7.9e-89 330.9 229 79.9
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.3e-87 325.5 230 79.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.1e-85 320.5 211 82.9
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 2.7e-81 305.8 176 82.4
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 3.6e-81 305.4 174 83.3
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 7.9e-81 304.3 180 81.1
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 7.9e-81 304.3 174 83.3
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 3.0e-80 302.4 229 69.4
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 3.9e-80 302.0 231 69.7
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.1e-79 300.4 208 71.2
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.5e-79 300.1 181 80.1
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 2.6e-79 299.3 230 67.4
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 3.3e-79 298.9 152 94.1
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.7e-78 296.6 234 67.9
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 2.8e-78 295.8 234 65.0
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 2.8e-78 295.8 234 68.8
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 3.7e-78 295.4 229 67.7
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 6.3e-78 294.7 229 68.1
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 3.1e-77 292.4 231 66.7
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 5.3e-77 291.6 231 64.9
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 5.3e-77 291.6 232 65.5
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 7.0e-77 291.2 177 79.1
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.6e-76 289.3 232 68.1
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.6e-76 289.3 232 65.1
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 3.5e-76 288.9 232 66.4
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 3.5e-76 288.9 236 64.4
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 5.9e-76 288.1 231 64.5
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 7.7e-76 287.7 230 68.3
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.7e-76 287.7 232 67.7
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 7.7e-76 287.7 232 67.2
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 7.7e-76 287.7 178 77.5
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.3e-75 287.0 229 67.7
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 1.3e-75 287.0 176 76.7
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.7e-75 286.6 179 77.7
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.7e-75 286.6 233 67.8
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 2.2e-75 286.2 224 65.6
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 2.2e-75 286.2 176 80.7
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.2e-75 286.2 232 66.4
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 2.2e-75 286.2 214 64.5
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.9e-75 285.8 214 71.0
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 5.0e-75 285.0 220 65.5
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 6.5e-75 284.6 202 67.8
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 8.5e-75 284.3 183 76.0
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.1e-74 283.9 235 64.7
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.4e-74 283.5 183 75.4
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 3.2e-74 282.3 232 67.2
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 3.2e-74 282.3 231 63.2
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 3.2e-74 282.3 232 64.7
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 3.2e-74 282.3 232 66.4
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 4.2e-74 282.0 179 76.5
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 5.5e-74 281.6 210 69.0
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.6e-73 280.0 233 65.7
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.7e-73 279.3 176 73.3
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 6.1e-73 278.1 213 63.8
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 6.1e-73 278.1 180 76.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.0e-72 277.3 184 74.5
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 1.0e-72 277.3 177 75.7
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.4e-72 276.9 180 75.0
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.8e-72 276.6 191 71.2
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.8e-72 276.6 228 66.7
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 1.8e-72 276.6 225 64.4
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.8e-72 276.6 180 75.6
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 3.0e-72 275.8 186 72.0
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 5.2e-72 275.0 176 75.6
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.5e-71 273.5 230 63.0
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.6e-71 272.7 175 74.9
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 9.7e-71 270.8 230 61.3
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 1.3e-70 270.4 174 73.6
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 8.2e-70 267.7 230 64.8
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 4.1e-69 265.4 231 65.4
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 5.3e-69 265.0 213 68.5
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 5.3e-69 265.0 151 82.8
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 7.0e-69 264.6 230 63.9
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 7.0e-69 264.6 230 65.2
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.2e-68 263.8 230 65.2
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.2e-68 263.8 230 63.9
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 2.6e-68 262.7 230 64.8
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 3.5e-68 262.3 230 64.8
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 7.7e-68 261.2 203 65.0
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.0e-67 260.8 229 64.6
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 3.8e-67 258.8 175 76.0
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 5.0e-67 258.5 229 64.2
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 6.5e-67 258.1 231 62.8
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.5e-66 256.1 232 61.2
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 4.2e-66 255.4 230 63.5
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 9.4e-66 254.2 173 72.3
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.6e-65 253.4 166 74.1
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 3.6e-65 252.3 175 67.4
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 4.7e-65 251.9 153 81.0
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 3.7e-62 242.3 178 64.6
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 1.8e-61 240.0 155 74.8
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.5e-60 235.7 153 76.5
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.2e-57 227.3 174 67.2
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 1.2e-57 227.3 205 59.0
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 6.1e-57 224.9 232 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 8.0e-57 224.6 169 63.9
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 8.0e-57 224.6 171 62.0
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 5.2e-56 221.9 232 52.6
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.2e-55 220.7 174 62.6
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 7.5e-55 218.0 151 68.9
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.7e-54 216.9 193 63.7
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 2.8e-54 216.1 259 50.6
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 4.1e-53 212.2 162 66.7
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 8.6e-51 204.5 169 61.5
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 3.6e-49 199.1 110 87.3
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 1.1e-45 187.6 232 50.4
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.8e-45 186.8 108 82.4
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 5.4e-45 185.3 176 61.4
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 8.6e-43 177.9 179 49.7
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.0e-40 171.0 113 77.0
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 3.2e-37 159.5 118 65.3
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.0e-35 152.9 95 80.0
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.9e-34 150.2 126 58.7
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 3.1e-32 142.9 127 59.1
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.5e-31 140.6 91 65.9
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.7e-30 136.0 95 68.4
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 3.2e-29 132.9 159 46.5
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.1e-28 130.2 76 81.6
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 3.0e-27 126.3 83 71.1
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 9.5e-26 121.3 122 55.7
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.6e-25 120.6 143 52.4
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 3.6e-25 119.4 87 67.8
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 5.2e-24 115.5 87 65.5
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 6.0e-20 102.1 69 68.1
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 6.0e-20 102.1 67 71.6
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.1e-16 91.3 53 77.4
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.5e-15 87.4 62 66.1
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 1.2e-12 77.8 59 64.4
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 1.9e-10 70.5 69 62.3


User provided reference genes

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