Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 5.4e-265 917.1 475 100.0
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 2.1e-216 755.7 476 86.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 3.8e-194 681.8 491 76.6
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.7e-181 639.8 489 71.0
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 5.9e-179 631.3 489 72.6
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 4.2e-169 598.6 435 73.3
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.2e-163 580.5 408 74.8
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 2.5e-161 572.8 494 65.6
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.0e-159 567.4 496 63.9
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 9.8e-158 560.8 476 64.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.1e-156 555.4 476 65.8
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 4.1e-156 555.4 488 65.2
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 4.5e-155 552.0 475 64.6
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 4.5e-155 552.0 479 63.5
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 7.7e-155 551.2 491 62.3
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 7.7e-155 551.2 492 62.6
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 1.3e-154 550.4 479 63.0
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 8.5e-154 547.7 491 62.1
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.9e-153 546.6 491 62.3
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 5.5e-153 545.0 490 63.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 7.2e-153 544.7 490 61.6
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 3.6e-152 542.3 473 63.8
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 4.7e-152 542.0 508 60.0
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 8.0e-152 541.2 411 69.6
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 8.0e-152 541.2 474 66.0
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 8.0e-152 541.2 485 63.3
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.8e-151 540.0 495 61.6
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 6.8e-151 538.1 486 63.4
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 8.8e-151 537.7 552 57.2
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 7.5e-150 534.6 488 61.7
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 9.8e-150 534.3 468 64.1
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 2.8e-149 532.7 479 62.4
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.7e-149 532.3 480 62.5
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 4.9e-149 531.9 490 61.2
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 8.3e-149 531.2 491 61.7
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 8.3e-149 531.2 492 61.6
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 2.4e-148 529.6 484 62.2
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 3.1e-148 529.3 421 67.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 5.4e-148 528.5 490 60.4
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 7.0e-148 528.1 488 60.9
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 9.2e-148 527.7 479 61.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 9.2e-148 527.7 493 60.4
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.0e-147 526.6 495 60.8
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 3.5e-147 525.8 420 66.7
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.5e-147 525.4 493 61.1
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.9e-147 525.0 493 60.9
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 5.9e-147 525.0 486 61.5
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 7.8e-147 524.6 409 68.9
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 6.6e-146 521.5 502 61.0
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.5e-145 519.6 486 59.7
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 5.6e-145 518.5 502 60.4
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 7.3e-145 518.1 477 62.3
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 7.3e-145 518.1 484 60.1
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.6e-144 515.8 481 61.5
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 1.0e-143 514.2 493 59.8
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.4e-143 513.8 453 62.7
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.4e-143 513.8 489 60.9
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 2.3e-143 513.1 483 61.3
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 8.9e-143 511.1 406 67.2
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.0e-142 510.0 480 61.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 4.4e-142 508.8 492 59.3
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 2.2e-141 506.5 377 71.9
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.4e-140 503.8 478 59.4
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 3.2e-140 502.7 482 58.3
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 5.4e-140 501.9 481 60.3
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.6e-139 500.4 483 59.4
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 2.0e-139 500.0 430 63.7
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 2.0e-139 500.0 406 65.8
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.3e-138 496.5 497 57.7
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 3.9e-138 495.7 463 59.0
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.9e-137 493.4 506 57.7
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 3.3e-137 492.7 406 64.3
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 5.6e-137 491.9 391 66.2
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.1e-136 490.0 506 56.9
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 8.0e-136 488.0 404 64.1
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 1.8e-135 486.9 427 61.4
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 8.9e-135 484.6 505 55.4
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 4.9e-133 478.8 436 60.3
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 5.4e-132 475.3 400 63.2
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.6e-131 473.8 481 57.6
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.6e-131 473.8 468 57.5
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 2.7e-131 473.0 417 60.7
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.7e-130 470.3 480 56.2
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.7e-130 470.3 480 57.1
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 2.3e-130 469.9 461 59.2
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 3.0e-130 469.5 482 55.8
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 3.0e-130 469.5 400 62.8
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 6.6e-130 468.4 481 56.3
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.3e-129 466.1 361 71.7
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 2.1e-128 463.4 482 55.4
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.5e-126 457.2 477 54.7
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 2.0e-126 456.8 475 55.2
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 2.6e-126 456.4 400 61.2
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 4.4e-126 455.7 400 61.8
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 7.5e-126 454.9 477 54.7
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.4e-124 450.7 480 54.4
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 4.6e-123 445.7 490 54.3
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 3.3e-121 439.5 385 62.1
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 3.3e-121 439.5 385 62.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 9.2e-116 421.4 373 60.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 4.6e-115 419.1 370 59.7
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 6.0e-115 418.7 370 61.1
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 8.6e-114 414.8 434 55.1
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 9.6e-113 411.4 480 51.9
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.2e-112 411.0 342 65.5
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 9.0e-111 404.8 330 66.7
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 2.1e-107 393.7 378 60.6
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.7e-106 390.6 356 61.5
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 2.5e-105 386.7 308 62.3
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 3.0e-98 363.2 396 49.2
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 1.6e-91 340.9 385 48.1
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 7.9e-91 338.6 398 47.0
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.9e-87 325.5 285 62.1
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 2.2e-85 320.5 352 53.1
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 4.6e-83 312.8 405 45.2
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 7.9e-83 312.0 282 59.6
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 5.3e-79 299.3 237 67.1
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 5.0e-77 292.7 297 51.9
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.1e-75 287.3 347 50.7
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 2.6e-65 253.8 340 43.5
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.1e-63 248.4 191 67.5
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.8e-63 247.7 327 45.6
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 9.1e-63 245.4 382 39.8
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 1.4e-60 238.0 327 44.6
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 4.2e-60 236.5 318 45.3
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 7.4e-57 225.7 206 58.7
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 6.7e-50 202.6 278 46.4
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.8e-47 194.5 194 60.3
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 5.3e-47 193.0 202 53.0
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.4e-31 141.0 332 33.4
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 2.1e-27 127.9 83 73.5
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 2.8e-27 127.5 84 77.4
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 6.1e-27 126.3 76 75.0
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 5.2e-26 123.2 151 51.7
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 8.6e-21 105.9 73 72.6
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.1e-20 105.5 87 62.1
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.4e-18 98.6 73 68.5
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 5.4e-15 86.7 81 54.3
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 5.6e-12 76.6 57 68.4
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.2e-09 68.9 85 51.8
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 5.4e-07 60.1 34 85.3


User provided reference genes

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