Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0135000 Rhododendron simsii HOM05D000804 ORTHO05D005389 4.9e-154 547.7 271 100.0
CSS0037336 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D005389 6.5e-98 361.3 274 67.5
Actinidia21598 Actinidia chinensis HOM05D000804 ORTHO05D005389 2.5e-97 359.4 284 64.4
vmacro21110 Vaccinium macrocarpon HOM05D000804 ORTHO05D005389 2.3e-95 352.8 410 50.7
Dinv43539 Davidia involucrata HOM05D000804 ORTHO05D005389 3.8e-90 335.5 281 63.0
Cfa003676 Carpinus fangiana HOM05D000804 ORTHO05D005389 3.1e-68 262.7 281 52.3
Oeu024961.1 Olea europaea HOM05D000804 ORTHO05D005389 1.6e-67 260.4 288 49.3
TAR375G0260 Trochodendron aralioides HOM05D000804 ORTHO05D005389 2.7e-67 259.6 284 52.8
Solyc01g081050.4 Solanum lycopersicum HOM05D000804 ORTHO05D005389 3.8e-66 255.8 282 51.1
CAN.G700.21 Capsicum annuum HOM05D000804 ORTHO05D005389 2.1e-64 250.0 286 49.7
VMungo0331G0574 Vigna mungo HOM05D000804 ORTHO05D005389 2.1e-64 250.0 282 51.4
Peaxi162Scf00592g00212 Petunia axillaris HOM05D000804 ORTHO05D005389 2.7e-64 249.6 269 50.6
Haze_15812 Corylus avellana HOM05D000804 ORTHO05D005389 3.6e-64 249.2 274 51.1
THA.LOC104825451 Tarenaya hassleriana HOM05D000804 ORTHO05D005389 5.2e-63 245.4 269 49.4
Nitab4.5_0003594g0030 Nicotiana tabacum HOM05D000804 ORTHO05D005389 8.8e-63 244.6 286 49.0
Migut.N01690 Erythranthe guttata HOM05D000804 ORTHO05D005389 4.4e-62 242.3 274 50.4
SalBow4G2892 Salvia bowleyana HOM05D000804 ORTHO05D005389 4.8e-61 238.8 279 48.4
Lsat_1_v5_gn_1_84561 Lactuca sativa HOM05D000804 ORTHO05D005389 1.1e-60 237.7 266 51.9
Psat4g196240 Pisum sativum HOM05D000804 ORTHO05D005389 1.4e-60 237.3 282 48.9
TPR.G30883 Trifolium pratense HOM05D000804 ORTHO05D005389 1.8e-60 236.9 282 48.9
Nn1g09657 Nelumbo nucifera HOM05D000804 ORTHO05D005389 2.4e-60 236.5 278 48.9
Glyma.03G021000 Glycine max HOM05D000804 ORTHO05D005389 3.1e-60 236.1 283 48.1
arahy.Tifrunner.gnm1.ann1.00QVML Arachis hypogaea HOM05D000804 ORTHO05D005389 7.0e-60 235.0 281 48.4
Ca_23822_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 7.0e-60 235.0 284 47.5
TWI32G1345 Tripterygium wilfordii HOM05D000804 ORTHO05D005389 7.0e-60 235.0 274 48.2
Ca_23827_v3 Cicer arietinum L. HOM05D000804 ORTHO05D005389 1.2e-59 234.2 283 47.7
DCAR_029554 Daucus carota HOM05D000804 ORTHO05D005389 1.2e-59 234.2 281 43.8
Lj3g0026096 Lotus japonicus HOM05D000804 ORTHO05D005389 1.6e-59 233.8 279 48.7
Aa31LG9G17950 Aethionema arabicum HOM05D000804 ORTHO05D005389 2.7e-59 233.0 268 46.6
Ciclev10030562m.g Citrus clementina HOM05D000804 ORTHO05D005389 7.7e-59 231.5 259 49.4
GSVIVG01011337001 Vitis vinifera HOM05D000804 ORTHO05D005389 1.0e-58 231.1 279 48.0
Thhalv10003545m.g Eutrema salsugineum HOM05D000804 ORTHO05D005389 1.7e-58 230.3 266 47.7
Atru.chr2.1715 Acer truncatum HOM05D000804 ORTHO05D005389 6.6e-58 228.4 278 45.0
Medtr8g035620 Medicago truncatula HOM05D000804 ORTHO05D005389 6.6e-58 228.4 282 46.8
QL04p052206 Quercus lobata HOM05D000804 ORTHO05D005389 6.6e-58 228.4 267 47.2
BcaC07g37646 Brassica carinata HOM05D000804 ORTHO05D005389 1.1e-57 227.6 270 47.4
Sp7g06220 Schrenkiella parvula HOM05D000804 ORTHO05D005389 1.1e-57 227.6 264 46.2
arahy.Tifrunner.gnm1.ann1.A8SNFY Arachis hypogaea HOM05D000804 ORTHO05D005389 2.5e-57 226.5 290 45.9
MSTRG.4983 Avicennia marina HOM05D000804 ORTHO05D005389 2.5e-57 226.5 279 47.0
Migut.O00426 Erythranthe guttata HOM05D000804 ORTHO05D005389 2.5e-57 226.5 272 48.9
Aqoxy3G02136 Aquilegia oxysepala HOM05D000804 ORTHO05D005389 7.2e-57 224.9 255 49.4
Carub.0007s3171 Capsella rubella HOM05D000804 ORTHO05D005389 1.2e-56 224.2 255 47.8
Duzib128G1116 Durio zibethinus HOM05D000804 ORTHO05D005389 1.2e-56 224.2 282 44.7
ECA248G3066 Erigeron canadensis HOM05D000804 ORTHO05D005389 1.6e-56 223.8 272 47.4
A08p09490 Brassica napus HOM05D000804 ORTHO05D005389 3.6e-56 222.6 267 47.9
PGR083G1621 Punica granatum HOM05D000804 ORTHO05D005389 4.7e-56 222.2 278 45.0
SGA_v2.0_scaffold4G02207 Striga asiatica HOM05D000804 ORTHO05D005389 6.1e-56 221.9 291 44.3
Lalb_Chr07g0189561 Lupinus albus HOM05D000804 ORTHO05D005389 1.0e-55 221.1 277 45.8
BraA08t32948Z Brassica rapa HOM05D000804 ORTHO05D005389 1.8e-55 220.3 267 47.9
AT5G35930 Arabidopsis thaliana HOM05D000804 ORTHO05D005389 2.3e-55 219.9 255 45.9
Cc02_g26260 Coffea canephora HOM05D000804 ORTHO05D005389 4.0e-55 219.2 283 45.2
Manes.09G131500 Manihot esculenta HOM05D000804 ORTHO05D005389 6.8e-55 218.4 275 47.3
Eucgr.D01046 Eucalyptus grandis HOM05D000804 ORTHO05D005389 1.2e-54 217.6 275 47.3
AL7G44840 Arabidopsis lyrata HOM05D000804 ORTHO05D005389 9.8e-54 214.5 258 45.0
Sed0024810 Sechium edule HOM05D000804 ORTHO05D005389 9.8e-54 214.5 272 45.2
PSO063G5197 Papaver somniferum HOM05D000804 ORTHO05D005389 1.3e-53 214.2 275 43.6
Potri.019G043800 Populus trichocarpa HOM05D000804 ORTHO05D005389 1.3e-53 214.2 265 46.0
BcaC07g37648 Brassica carinata HOM05D000804 ORTHO05D005389 2.8e-53 213.0 271 45.8
CiPaw.01G087500 Carya illinoinensis HOM05D000804 ORTHO05D005389 6.3e-53 211.8 272 44.9
BolC8t48020H Brassica oleracea HOM05D000804 ORTHO05D005389 3.1e-52 209.5 273 45.8
HanXRQChr01g0020521 Helianthus annuus HOM05D000804 ORTHO05D005389 2.7e-51 206.5 258 46.9
MELO3C020372.2 Cucumis melo HOM05D000804 ORTHO05D005389 3.5e-51 206.1 272 44.9
Sabra19G0054400 Salix brachista HOM05D000804 ORTHO05D005389 5.9e-51 205.3 267 43.1
Gohir.A13G075600 Gossypium hirsutum HOM05D000804 ORTHO05D005389 7.8e-51 204.9 281 39.5
Gohir.D13G099900 Gossypium hirsutum HOM05D000804 ORTHO05D005389 1.0e-50 204.5 281 39.5
Gorai.013G111900 Gossypium raimondii HOM05D000804 ORTHO05D005389 1.0e-50 204.5 281 39.5
HPP92_005377 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.3e-50 204.1 272 43.4
CARHR216700 Cardamine hirsuta HOM05D000804 ORTHO05D005389 1.7e-50 203.8 259 43.6
ClCG06G008140 Citrullus lanatus HOM05D000804 ORTHO05D005389 2.3e-50 203.4 272 44.9
CsaV3_2G011020 Cucumis sativus L. HOM05D000804 ORTHO05D005389 3.8e-50 202.6 273 45.1
HPP92_005437 Vanilla planifolia HOM05D000804 ORTHO05D005389 3.8e-50 202.6 271 43.2
EL10Ac5g10540 Beta vulgaris HOM05D000804 ORTHO05D005389 2.5e-49 199.9 272 44.5
HPP92_005379 Vanilla planifolia HOM05D000804 ORTHO05D005389 1.2e-48 197.6 267 43.1
Hma1.2p1_0684F.1_g202990 Hydrangea macrophylla HOM05D000804 ORTHO05D005389 6.1e-48 195.3 154 61.7
AUR62028598 Chenopodium quinoa HOM05D000804 ORTHO05D005389 4.0e-47 192.6 261 42.5
Sc17g0001320 Simmondsia chinensis HOM05D000804 ORTHO05D005389 6.8e-47 191.8 261 42.9
unitig_22.g5901 Utricularia gibba HOM05D000804 ORTHO05D005389 3.4e-46 189.5 257 45.5
CDE12G0088 Ceratophyllum demersum HOM05D000804 ORTHO05D005389 2.9e-45 186.4 303 36.3
MD07G1077300 Malus domestica HOM05D000804 ORTHO05D005389 2.3e-42 176.8 266 41.7
FAN06G2879 Fragaria x ananassa HOM05D000804 ORTHO05D005389 3.6e-40 169.5 250 44.0
FAN10G1244 Fragaria x ananassa HOM05D000804 ORTHO05D005389 8.0e-40 168.3 250 42.8
FAN01G2963 Fragaria x ananassa HOM05D000804 ORTHO05D005389 4.0e-39 166.0 250 42.8
BcaB04g18017 Brassica carinata HOM05D000804 ORTHO05D005389 5.2e-39 165.6 266 39.8
Lj7C558T5 Lonicera japonica HOM05D000804 ORTHO05D005389 5.2e-39 165.6 129 62.8
Phvul.010G085900 Phaseolus vulgaris HOM05D000804 ORTHO05D005389 6.8e-39 165.2 144 58.3
ATR0829G026 Amborella trichopoda HOM05D000804 ORTHO05D005389 2.0e-38 163.7 306 36.9
arahy.Tifrunner.gnm1.ann1.WIDJ0V Arachis hypogaea HOM05D000804 ORTHO05D005389 2.9e-37 159.8 256 39.5
Prupe.2G098200 Prunus persica HOM05D000804 ORTHO05D005389 3.7e-37 159.5 275 38.9
RcHm_v2.0_Chr1g0337111 Rosa chinensis HOM05D000804 ORTHO05D005389 3.7e-37 159.5 250 42.4
Cpa.g.sc73.84 Carica papaya HOM05D000804 ORTHO05D005389 8.3e-37 158.3 148 51.4
Ah.02g110870 Amaranthus hybridus HOM05D000804 ORTHO05D005389 2.3e-34 150.2 264 36.0
Nitab4.5_0000592g0230 Nicotiana tabacum HOM05D000804 ORTHO05D005389 2.8e-32 143.3 126 56.3
Zm00001eb378990 Zea mays HOM05D000804 ORTHO05D005389 3.1e-31 139.8 265 33.6
AUR62017553 Chenopodium quinoa HOM05D000804 ORTHO05D005389 3.3e-25 119.8 129 46.5
SEGI_25496 Sequoiadendron giganteum HOM05D000804 ORTHO05D005389 7.3e-25 118.6 141 43.3
Os06g0111600 Oryza sativa ssp. japonica HOM05D000804 ORTHO05D005389 1.4e-23 114.4 140 47.9
RcHm_v2.0_Chr2g0102891 Rosa chinensis HOM05D000804 ORTHO05D005389 2.2e-21 107.1 132 43.9
Nitab4.5_0000592g0240 Nicotiana tabacum HOM05D000804 ORTHO05D005389 7.8e-19 98.6 117 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1272 Anthoceros agrestis HOM05D000804 ORTHO05D005389 4.3e-17 92.8 277 27.1
Cpa.g.sc73.83 Carica papaya HOM05D000804 ORTHO05D005389 5.3e-15 85.9 106 45.3
SMO145G0113 Selaginella moellendorffii HOM05D000804 ORTHO05D005389 9.0e-15 85.1 125 38.4
EL10Ac9g22056 Beta vulgaris HOM05D000169 ORTHO05D004780 1.4e-07 61.2 212 25.0
Ah.01g021720 Amaranthus hybridus HOM05D000169 ORTHO05D004780 3.1e-07 60.1 193 25.9
Sc15g0002130 Simmondsia chinensis HOM05D000169 ORTHO05D004780 3.1e-07 60.1 179 27.4
Solyc12g044290.2 Solanum lycopersicum HOM05D000169 ORTHO05D004780 4.0e-07 59.7 217 21.7
RcHm_v2.0_Chr1g0337141 Rosa chinensis HOM05D000804 ORTHO05D005389 1.2e-06 58.2 30 83.3
Peaxi162Scf00034g00413 Petunia axillaris HOM05D000169 ORTHO05D004780 2.6e-06 57.0 137 29.2
Cpa.g.sc296.4 Carica papaya HOM05D000169 ORTHO05D004780 3.4e-06 56.6 132 28.8
MCO03G569 Micromonas commoda HOM05D000804 ORTHO05D005389 3.4e-06 56.6 186 25.3
Lsat_1_v5_gn_4_103101 Lactuca sativa HOM05D000169 ORTHO05D004780 4.5e-06 56.2 173 26.0
MCO11G373 Micromonas commoda HOM05D000804 ORTHO05D005389 4.5e-06 56.2 138 31.9
HPP92_024579 Vanilla planifolia HOM05D000169 ORTHO05D004780 4.5e-06 56.2 184 22.8
Nitab4.5_0001968g0110 Nicotiana tabacum HOM05D000169 ORTHO05D004780 5.8e-06 55.8 217 20.7
CSS0039624 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D004780 7.6e-06 55.5 199 24.6
AUR62011680 Chenopodium quinoa HOM05D000169 ORTHO05D004780 9.9e-06 55.1 143 29.4
AUR62016505 Chenopodium quinoa HOM05D000169 ORTHO05D004780 9.9e-06 55.1 143 29.4
HanXRQChr16g0500801 Helianthus annuus HOM05D000169 ORTHO05D004780 9.9e-06 55.1 246 24.8


User provided reference genes

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