Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 1.3e-117 426.4 223 100.0
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 3.2e-87 325.5 227 79.3
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 8.6e-72 274.2 235 67.7
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 8.3e-67 257.7 220 68.2
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 8.6e-64 247.7 175 73.1
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.5e-63 246.9 169 79.3
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 2.5e-63 246.1 182 76.4
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 2.8e-62 242.7 215 61.9
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 3.6e-62 242.3 211 64.9
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 3.1e-61 239.2 233 61.4
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 6.8e-61 238.0 181 69.1
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 5.8e-60 235.0 184 69.0
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 2.2e-59 233.0 176 69.3
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 3.7e-59 232.3 203 60.6
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 3.7e-59 232.3 261 54.0
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 4.9e-59 231.9 207 62.8
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 1.1e-58 230.7 180 72.2
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.1e-58 230.7 172 70.9
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 1.9e-58 229.9 206 63.1
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 5.4e-58 228.4 154 76.6
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 5.4e-58 228.4 236 55.1
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 2.7e-57 226.1 204 61.3
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 2.7e-57 226.1 164 73.2
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 7.8e-57 224.6 206 61.7
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.0e-56 224.2 198 63.1
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 2.3e-56 223.0 171 66.7
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 5.0e-56 221.9 172 66.3
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 5.0e-56 221.9 179 66.5
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 8.6e-56 221.1 181 63.0
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 1.9e-55 219.9 218 56.0
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 3.3e-55 219.2 184 64.1
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 5.6e-55 218.4 187 63.6
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 5.6e-55 218.4 172 66.3
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 9.5e-55 217.6 187 62.6
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.6e-54 216.9 218 56.0
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 2.1e-54 216.5 168 69.0
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 2.1e-54 216.5 213 61.0
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 6.2e-54 214.9 221 57.9
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 6.2e-54 214.9 213 60.6
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 8.1e-54 214.5 173 65.3
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 1.1e-53 214.2 168 67.3
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 1.8e-53 213.4 145 75.9
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 2.3e-53 213.0 191 60.2
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 3.1e-53 212.6 220 56.4
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 4.0e-53 212.2 217 57.6
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 5.2e-53 211.8 194 61.9
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 5.2e-53 211.8 220 56.4
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 8.9e-53 211.1 182 64.3
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 2.6e-52 209.5 225 57.8
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 4.4e-52 208.8 213 58.2
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 2.9e-51 206.1 219 57.5
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 4.9e-51 205.3 145 72.4
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 6.4e-51 204.9 164 64.0
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 3.2e-50 202.6 169 63.3
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 4.1e-50 202.2 192 60.9
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 7.1e-50 201.4 207 61.4
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 1.3e-48 197.2 177 63.3
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 3.0e-48 196.1 152 67.1
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 5.1e-48 195.3 206 56.8
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 6.6e-48 194.9 177 64.4
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 4.3e-47 192.2 144 68.8
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 5.6e-47 191.8 207 53.6
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 7.3e-47 191.4 195 56.9
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 9.5e-47 191.0 173 61.3
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 3.6e-46 189.1 163 60.7
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.1e-45 187.6 186 56.5
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 6.8e-45 184.9 186 55.9
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 6.8e-45 184.9 186 55.9
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 8.9e-45 184.5 147 66.0
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 1.5e-44 183.7 199 54.8
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 3.4e-44 182.6 206 54.9
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 4.4e-44 182.2 162 65.4
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 7.6e-44 181.4 186 54.8
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 7.6e-44 181.4 186 54.8
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 9.9e-44 181.0 172 59.3
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 1.7e-43 180.3 174 58.0
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 2.2e-43 179.9 178 58.4
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 3.8e-43 179.1 170 57.1
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 4.9e-43 178.7 206 54.4
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 2.4e-42 176.4 186 53.8
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 3.2e-42 176.0 170 57.6
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 7.1e-42 174.9 155 60.6
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.2e-41 174.1 171 57.9
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 1.6e-41 173.7 183 54.1
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 6.0e-41 171.8 152 62.5
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 8.6e-40 167.9 172 57.6
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 1.1e-39 167.5 164 59.1
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.9e-39 166.8 172 57.0
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 1.2e-38 164.1 179 54.7
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 4.7e-38 162.2 120 70.8
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 1.1e-37 161.0 182 56.6
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 1.4e-37 160.6 112 74.1
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 1.4e-37 160.6 120 70.8
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 4.4e-36 155.6 120 70.0
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 2.9e-35 152.9 162 56.2
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 1.1e-34 151.0 163 54.6
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 9.3e-34 147.9 116 64.7
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 6.6e-32 141.7 161 50.9
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 2.8e-30 136.3 125 60.8
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 1.5e-28 130.6 116 62.1
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.5e-28 130.6 215 41.4
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 2.2e-27 126.7 209 40.2
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 6.0e-25 118.6 144 51.4
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 5.3e-21 105.5 219 36.5
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 1.3e-19 100.9 117 47.0
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 5.5e-18 95.5 65 70.8
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 5.1e-16 89.0 77 58.4
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 2.1e-14 83.6 218 33.9
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 3.7e-14 82.8 154 35.7
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.8e-13 80.5 86 57.0
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 3.2e-10 69.7 51 72.5
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 3.2e-10 69.7 142 34.5
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 1.2e-09 67.8 206 30.6
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 3.0e-08 63.2 125 40.0
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 6.3e-06 55.5 116 34.5


User provided reference genes

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