Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.4e-69 265.4 132 100.0
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.6e-41 172.9 125 76.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.1e-31 140.2 122 64.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 7.4e-31 137.5 114 71.1
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.7e-30 136.3 122 59.8
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 6.3e-30 134.4 122 59.8
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 6.3e-30 134.4 122 60.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 5.9e-28 127.9 126 55.6
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.4e-24 116.7 120 57.5
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 9.7e-23 110.5 126 51.6
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.3e-22 110.2 111 57.7
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.2e-22 107.5 123 49.6
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.4e-21 105.9 122 51.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 6.9e-21 104.4 122 51.6
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.5e-20 101.7 126 48.4
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 7.7e-20 100.9 121 48.8
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.0e-19 100.5 122 49.2
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.3e-19 100.1 131 46.6
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.7e-19 99.8 121 52.9
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.2e-19 99.4 122 45.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.9e-19 99.0 122 50.0
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.9e-19 99.0 123 48.0
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.9e-19 99.0 123 48.0
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 5.0e-19 98.2 124 47.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.9e-18 96.3 122 46.7
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.9e-18 96.3 122 45.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 3.2e-18 95.5 120 50.0
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.5e-18 94.7 122 46.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 5.5e-18 94.7 123 51.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 9.4e-18 94.0 123 45.5
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.2e-17 93.6 123 42.3
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.2e-17 93.6 122 45.1
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-17 93.6 119 50.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.1e-17 92.8 122 45.1
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 2.7e-17 92.4 123 47.2
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.7e-17 92.4 141 42.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.6e-17 92.0 122 42.6
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 6.1e-17 91.3 122 42.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 8.0e-17 90.9 124 42.7
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.0e-17 90.9 121 47.1
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.4e-16 90.1 126 45.2
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.8e-16 89.7 127 44.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.3e-16 89.4 133 47.4
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.3e-16 89.4 123 43.9
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.0e-16 89.0 123 45.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.9e-16 88.6 124 46.8
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.2e-16 88.2 119 46.2
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 8.8e-16 87.4 122 42.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.8e-16 87.4 130 46.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.5e-15 86.7 136 40.4
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.5e-15 86.7 127 41.7
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 4.4e-15 85.1 130 43.8
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.4e-15 85.1 123 45.5
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 4.4e-15 85.1 121 45.5
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.4e-15 85.1 123 47.2
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.4e-15 85.1 124 42.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.4e-15 85.1 129 46.5
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.7e-15 84.7 130 43.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.7e-15 84.7 127 38.6
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 9.7e-15 84.0 121 45.5
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.3e-14 83.6 122 43.4
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.3e-14 83.6 125 47.2
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.7e-14 83.2 130 43.1
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.8e-14 82.4 124 43.5
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.7e-14 82.0 77 59.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 4.8e-14 81.6 123 44.7
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 6.3e-14 81.3 122 44.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.8e-13 79.7 110 46.4
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.8e-13 79.7 123 43.9
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 3.1e-13 79.0 128 43.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 5.3e-13 78.2 128 41.4
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 9.1e-13 77.4 125 43.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 9.1e-13 77.4 133 39.1
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.6e-12 76.6 118 38.1
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.6e-12 76.6 122 42.6
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.0e-12 76.3 127 40.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.5e-12 75.1 122 41.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.0e-11 73.9 127 38.6
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.0e-11 73.9 126 39.7
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 6.5e-11 71.2 117 42.7
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 6.5e-11 71.2 116 38.8
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.5e-11 70.9 98 49.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-10 70.5 110 39.1
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.5e-10 69.3 126 39.7
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.4e-10 67.4 110 38.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.4e-10 67.4 56 58.9
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 9.4e-10 67.4 129 40.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.7e-09 65.9 133 39.1
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 8.0e-09 64.3 110 40.9
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.4e-08 63.5 123 36.6
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 4.0e-08 62.0 123 38.2
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 5.2e-08 61.6 54 59.3
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 8.8e-08 60.8 124 39.5
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.2e-07 60.5 115 37.4
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.5e-07 60.1 151 30.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-07 60.1 124 37.1
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.3e-07 58.9 56 53.6
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.3e-06 57.0 151 32.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.8e-06 55.8 151 31.1
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.8e-06 55.1 120 37.5
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 6.3e-06 54.7 129 35.7
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 8.2e-06 54.3 150 32.7


User provided reference genes

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