Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.3e-228 794.3 393 100.0
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 2.7e-76 290.0 297 56.2
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 6.1e-73 278.9 299 53.5
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 3.4e-71 273.1 349 51.9
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 4.9e-70 269.2 300 54.0
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 7.3e-66 255.4 291 52.6
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 7.3e-66 255.4 301 53.2
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 2.8e-65 253.4 292 51.7
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 1.4e-64 251.1 293 50.9
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 2.3e-64 250.4 293 51.2
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 8.9e-64 248.4 290 51.4
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 8.9e-64 248.4 291 49.5
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.6e-63 246.9 293 50.2
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 5.7e-63 245.7 296 49.0
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 7.5e-63 245.4 298 50.3
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.3e-62 244.6 293 49.5
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 1.7e-62 244.2 297 48.5
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 8.3e-62 241.9 292 49.3
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 8.3e-62 241.9 296 51.7
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 1.1e-61 241.5 292 49.3
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 1.8e-61 240.7 292 49.7
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.8e-61 240.7 293 49.8
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 4.1e-61 239.6 292 49.0
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 7.0e-61 238.8 293 49.5
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 7.0e-61 238.8 294 49.7
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 1.6e-60 237.7 310 48.1
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.6e-60 237.7 290 50.3
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 6.0e-60 235.7 303 48.5
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.0e-59 235.0 294 48.3
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 1.3e-59 234.6 293 50.2
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.7e-59 234.2 293 48.8
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.7e-59 234.2 293 49.1
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.3e-59 233.8 293 48.5
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 8.6e-59 231.9 296 48.3
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 8.6e-59 231.9 287 49.8
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 8.6e-59 231.9 293 48.8
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.1e-58 231.5 290 49.7
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.5e-58 231.1 296 47.6
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 1.9e-58 230.7 291 47.8
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.9e-58 230.7 293 48.5
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 4.3e-58 229.6 293 48.5
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 5.6e-58 229.2 280 49.3
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 7.3e-58 228.8 290 47.9
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 7.3e-58 228.8 293 48.1
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 2.1e-57 227.3 290 47.6
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 3.6e-57 226.5 290 48.3
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 3.6e-57 226.5 298 47.3
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 4.7e-57 226.1 297 48.1
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 4.7e-57 226.1 292 46.6
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 6.2e-57 225.7 293 47.1
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 8.0e-57 225.3 293 47.4
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.1e-56 224.9 290 47.2
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.8e-56 224.2 295 47.8
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 3.1e-56 223.4 293 45.4
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 4.0e-56 223.0 295 47.1
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.5e-55 221.1 295 45.8
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 2.0e-55 220.7 290 47.9
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.4e-55 219.9 297 46.1
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 4.4e-55 219.5 294 46.6
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 4.4e-55 219.5 296 46.3
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 5.8e-55 219.2 292 46.6
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 5.8e-55 219.2 296 45.6
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 5.8e-55 219.2 294 46.6
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 9.8e-55 218.4 295 46.1
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-54 218.0 296 45.9
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-54 218.0 296 45.9
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.7e-54 217.6 297 45.8
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 3.7e-54 216.5 296 45.6
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 4.9e-54 216.1 293 45.7
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 6.4e-54 215.7 299 46.5
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 8.3e-54 215.3 299 46.8
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 2.4e-53 213.8 293 46.4
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 4.1e-53 213.0 359 41.8
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 5.4e-53 212.6 294 45.2
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 7.0e-53 212.2 291 45.0
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.7e-52 210.3 291 45.4
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 7.8e-52 208.8 291 44.3
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.6e-51 205.7 297 44.4
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 8.6e-51 205.3 294 44.9
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 8.6e-51 205.3 290 46.6
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 8.6e-51 205.3 295 45.4
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 1.9e-50 204.1 295 45.1
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 3.3e-50 203.4 300 43.7
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 3.3e-50 203.4 292 46.6
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 7.3e-50 202.2 293 44.4
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 7.3e-50 202.2 261 50.2
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.2e-49 201.4 295 44.7
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.2e-49 201.4 295 44.7
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 1.6e-49 201.1 295 44.7
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.6e-49 201.1 296 43.6
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 4.7e-49 199.5 295 40.7
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 1.1e-48 198.4 293 41.0
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.4e-48 198.0 238 49.6
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.8e-48 197.6 295 42.0
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.1e-48 196.8 290 45.2
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 4.0e-48 196.4 257 47.1
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.2e-48 196.1 290 45.2
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 6.8e-48 195.7 269 46.5
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 2.6e-47 193.7 305 42.3
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 2.6e-47 193.7 293 41.6
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 1.3e-46 191.4 280 45.7
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 1.1e-45 188.3 292 41.1
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 7.1e-45 185.7 289 41.9
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 7.1e-45 185.7 294 40.1
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 3.5e-44 183.3 293 41.6
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 6.0e-44 182.6 289 41.9
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 7.8e-44 182.2 319 39.8
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.7e-43 181.0 295 40.3
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 3.0e-43 180.3 241 45.2
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 6.6e-43 179.1 294 40.8
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 6.6e-43 179.1 289 40.5
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 8.6e-43 178.7 300 39.7
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 3.3e-42 176.8 294 40.5
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 3.3e-42 176.8 294 40.5
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 7.3e-42 175.6 290 39.7
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 7.3e-42 175.6 293 40.3
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.2e-41 174.9 306 40.5
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.2e-41 174.9 294 39.8
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 1.6e-41 174.5 294 40.1
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 2.8e-41 173.7 252 45.6
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 4.7e-41 172.9 293 39.9
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 6.2e-41 172.6 294 39.8
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.2e-41 172.6 302 38.4
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 6.2e-41 172.6 295 39.7
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 8.1e-41 172.2 290 40.0
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 8.1e-41 172.2 290 39.3
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 8.1e-41 172.2 302 38.4
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.4e-40 171.4 291 40.9
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 2.4e-40 170.6 290 39.7
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.4e-40 170.6 292 38.4
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 4.0e-40 169.9 294 39.1
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 4.0e-40 169.9 294 39.1
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 1.5e-39 167.9 290 39.3
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.0e-39 167.5 314 38.9
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 2.0e-39 167.5 290 39.0
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 2.0e-39 167.5 290 39.0
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 4.4e-39 166.4 290 38.6
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 4.4e-39 166.4 290 38.6
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 4.4e-39 166.4 254 40.2
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 2.9e-38 163.7 290 37.6
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.1e-37 161.8 303 37.6
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 1.2e-36 158.3 289 39.1
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.5e-34 151.4 340 37.4
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 3.3e-34 150.2 140 55.7
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.4e-32 144.8 263 36.1
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 2.6e-31 140.6 243 37.9
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 1.9e-26 124.4 115 60.0
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 3.3e-26 123.6 84 75.0
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.6e-25 121.3 242 36.8
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 4.0e-24 116.7 96 63.5
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.5e-23 114.8 258 31.8
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.5e-23 114.8 252 32.1
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 3.4e-23 113.6 96 57.3
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 4.5e-23 113.2 70 80.0
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 1.9e-21 107.8 114 56.1
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 3.2e-21 107.1 68 77.9
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 9.3e-21 105.5 246 31.3
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 8.7e-19 99.0 191 36.1
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-18 98.6 65 72.3
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.1e-18 98.6 276 30.4
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.1e-18 98.6 85 61.2
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.5e-18 98.2 70 70.0
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.9e-18 97.8 85 61.2
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.9e-18 97.8 89 57.3
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.5e-18 97.4 59 78.0
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.5e-15 88.2 65 69.2
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 2.6e-15 87.4 233 24.0
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.4e-15 87.0 79 55.7
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.7e-14 84.7 206 33.0
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.4e-13 80.9 243 24.3
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 3.0e-11 73.9 206 29.6
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 2.8e-09 67.4 55 58.2
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 8.2e-09 65.9 231 22.9


User provided reference genes

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