Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0129000 Rhododendron simsii HOM05D000045 ORTHO05D035228 1.1e-141 506.5 250 100.0
Rhsim10G0077500 Rhododendron simsii HOM05D000045 ORTHO05D004773 1.3e-49 200.7 231 51.5
Rhsim03G0106600 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.2e-47 191.4 354 34.2
PSO017G1459 Papaver somniferum HOM05D000045 ORTHO05D000067 6.3e-23 112.1 162 38.9
COL.COLO4_20433 Corchorus olitorius HOM05D000045 ORTHO05D000067 5.9e-21 105.5 394 23.6
COL.COLO4_23494 Corchorus olitorius HOM05D000045 ORTHO05D000067 5.9e-21 105.5 374 24.6
PSO541G3807 Papaver somniferum HOM05D000045 ORTHO05D000067 1.0e-20 104.8 183 34.4
PSO017G6906 Papaver somniferum HOM05D000045 ORTHO05D000067 5.0e-20 102.4 183 33.9
COL.COLO4_24114 Corchorus olitorius HOM05D000045 ORTHO05D000067 8.5e-20 101.7 255 30.6
PSO206G0012 Papaver somniferum HOM05D000045 ORTHO05D000067 4.2e-19 99.4 183 33.9
PSO478G2634 Papaver somniferum HOM05D000045 ORTHO05D000067 4.2e-19 99.4 183 33.9
Rhsim07G0064000 Rhododendron simsii HOM05D000689 ORTHO05D014235 9.4e-19 98.2 59 81.4
PSO541G1553 Papaver somniferum HOM05D000045 ORTHO05D000067 1.2e-18 97.8 183 33.3
PSO782G2804 Papaver somniferum HOM05D000045 ORTHO05D000067 1.2e-18 97.8 183 33.3
PSO063G1714 Papaver somniferum HOM05D000045 ORTHO05D000067 8.0e-18 95.1 183 32.8
PSO675G1270 Papaver somniferum HOM05D000045 ORTHO05D000067 8.0e-18 95.1 183 32.2
PSO832G0851 Papaver somniferum HOM05D000045 ORTHO05D000067 8.0e-18 95.1 183 33.3
PSO017G5463 Papaver somniferum HOM05D000045 ORTHO05D000067 2.3e-17 93.6 182 31.3
QL01p039642 Quercus lobata HOM05D000045 ORTHO05D000067 2.3e-17 93.6 176 33.0
QL04p049080 Quercus lobata HOM05D000045 ORTHO05D000067 2.3e-17 93.6 176 33.0
PSO700G0356 Papaver somniferum HOM05D000045 ORTHO05D000067 4.0e-17 92.8 182 29.1
PSO782G4013 Papaver somniferum HOM05D000045 ORTHO05D000067 5.2e-17 92.4 182 30.8
FvH4_2g38071 Fragaria vesca HOM05D000045 ORTHO05D000067 6.8e-17 92.0 181 32.6
CANSAT11G1643 Cannabis sativa HOM05D000045 ORTHO05D000611 8.8e-17 91.7 179 32.4
RcHm_v2.0_Chr6g0276821 Rosa chinensis HOM05D000045 ORTHO05D000067 1.5e-16 90.9 181 31.5
CANSAT01G2577 Cannabis sativa HOM05D000045 ORTHO05D000067 7.5e-16 88.6 194 30.9
PSO063G4645 Papaver somniferum HOM05D000045 ORTHO05D000067 4.8e-15 85.9 78 51.3
COL.COLO4_34876 Corchorus olitorius HOM05D000045 ORTHO05D000067 1.4e-14 84.3 181 29.3
PSO017G1085 Papaver somniferum HOM05D000045 ORTHO05D021160 1.4e-14 84.3 78 51.3
CANSAT64G0193 Cannabis sativa HOM05D000045 ORTHO05D000067 4.5e-13 79.3 78 48.7
CANSAT78G0044 Cannabis sativa HOM05D000045 ORTHO05D000067 1.0e-12 78.2 70 54.3
CANSAT35G0619 Cannabis sativa HOM05D000045 ORTHO05D000067 3.8e-12 76.3 116 31.9
Atru.chr12.1477 Acer truncatum HOM05D000045 ORTHO05D000067 1.5e-11 74.3 90 42.2
Cc00_g01440 Coffea canephora HOM05D000045 ORTHO05D000611 7.2e-11 72.0 163 31.3
HPP92_017086 Vanilla planifolia HOM05D000045 ORTHO05D000067 7.2e-11 72.0 119 37.8
PSO017G2321 Papaver somniferum HOM05D000045 ORTHO05D000067 9.5e-11 71.6 105 34.3
Rhsim09G0196900 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.2e-10 71.2 168 27.4
CANSAT64G2947 Cannabis sativa HOM05D000045 ORTHO05D000067 1.6e-10 70.9 78 42.3
GSVIVG01033506001 Vitis vinifera HOM05D000045 ORTHO05D000067 1.6e-10 70.9 174 29.3
Atru.chr5.514 Acer truncatum HOM05D000045 ORTHO05D000067 2.1e-10 70.5 170 26.5
PSO063G3173 Papaver somniferum HOM05D000045 ORTHO05D000067 4.7e-10 69.3 74 43.2
Duzib205G0811 Durio zibethinus HOM05D000045 ORTHO05D000067 8.0e-10 68.6 178 27.0
MBI19_g25066_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 1.0e-09 68.2 177 29.9
Gohir.A09G040300 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.4e-09 67.8 168 26.2
Gohir.D09G040975 Gossypium hirsutum HOM05D000045 ORTHO05D000067 1.4e-09 67.8 168 26.2
Gorai.006G047000 Gossypium raimondii HOM05D000045 ORTHO05D000067 1.4e-09 67.8 168 26.2
Potri.012G137500 Populus trichocarpa HOM05D000045 ORTHO05D000067 1.4e-09 67.8 188 30.9
PSO017G5268 Papaver somniferum HOM05D000045 ORTHO05D035228 1.8e-09 67.4 105 31.4
Thhalv10021958m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 2.3e-09 67.0 78 41.0
Ciclev10014295m.g Citrus clementina HOM05D000045 ORTHO05D000067 4.0e-09 66.2 174 26.4
Thhalv10022007m.g Eutrema salsugineum HOM05D000045 ORTHO05D000067 4.0e-09 66.2 142 31.0
FvH4_4g15809 Fragaria vesca HOM05D000045 ORTHO05D000067 6.8e-09 65.5 156 25.0
Atru.chr3.2441 Acer truncatum HOM05D000045 ORTHO05D000067 8.8e-09 65.1 179 24.6
HPP92_009461 Vanilla planifolia HOM05D000045 ORTHO05D000067 8.8e-09 65.1 179 26.3
CANSAT64G1822 Cannabis sativa HOM05D000045 ORTHO05D000067 1.2e-08 64.7 179 27.4
MBI15_g34794_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 1.2e-08 64.7 112 33.0
Thecc.03G171700 Theobroma cacao HOM05D000045 ORTHO05D000067 1.2e-08 64.7 168 26.2
Thecc.04G026200 Theobroma cacao HOM05D000045 ORTHO05D000067 1.2e-08 64.7 168 27.4
Ciclev10018794m.g Citrus clementina HOM05D000045 ORTHO05D000067 1.5e-08 64.3 91 37.4
MD17G1186900 Malus domestica HOM05D000045 ORTHO05D000067 1.5e-08 64.3 73 39.7
Prupe.4G268600 Prunus persica HOM05D000045 ORTHO05D000611 2.0e-08 63.9 66 43.9
Rhsim08G0046500 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.0e-08 63.9 179 25.7
Atru.chr11.2219 Acer truncatum HOM05D000045 ORTHO05D000067 2.6e-08 63.5 71 43.7
Gorai.006G037100 Gossypium raimondii HOM05D000045 ORTHO05D000067 2.6e-08 63.5 179 25.1
CiPaw.09G035500 Carya illinoinensis HOM05D000045 ORTHO05D000067 3.4e-08 63.2 120 30.8
FvH4_7g13761 Fragaria vesca HOM05D000045 ORTHO05D000067 3.4e-08 63.2 227 23.3
Sed0007023 Sechium edule HOM05D000045 ORTHO05D000067 3.4e-08 63.2 78 39.7
Prupe.2G291000 Prunus persica HOM05D000045 ORTHO05D000067 4.4e-08 62.8 94 37.2
TAR483G0002 Trochodendron aralioides HOM05D000045 ORTHO05D000067 4.4e-08 62.8 170 28.2
Duzib147G0739 Durio zibethinus HOM05D000045 ORTHO05D000067 5.7e-08 62.4 168 26.8
AL3G45180 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 7.5e-08 62.0 78 37.2
BolC3t18233H Brassica oleracea HOM05D000045 ORTHO05D000067 7.5e-08 62.0 75 42.7
Os07g0615900 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 7.5e-08 62.0 178 26.4
Carub.0008s0977 Capsella rubella HOM05D000045 ORTHO05D000067 9.8e-08 61.6 74 40.5
Glyma.10G238500 Glycine max HOM05D000045 ORTHO05D000067 9.8e-08 61.6 93 36.6
Gohir.D09G032200 Gossypium hirsutum HOM05D000045 ORTHO05D000067 9.8e-08 61.6 93 35.5
Sabra12G0103000 Salix brachista HOM05D000045 ORTHO05D000067 9.8e-08 61.6 160 32.5
CiPaw.03G103400 Carya illinoinensis HOM05D000045 ORTHO05D000067 1.3e-07 61.2 102 35.3
FvH4_1g15941 Fragaria vesca HOM05D000045 ORTHO05D004773 1.3e-07 61.2 168 27.4
Prupe.5G094100 Prunus persica HOM05D000045 ORTHO05D000611 1.3e-07 61.2 66 42.4
RcHm_v2.0_Chr1g0376821 Rosa chinensis HOM05D000045 ORTHO05D000067 1.3e-07 61.2 128 32.0
Carub.0007s3028 Capsella rubella HOM05D000045 ORTHO05D000067 1.7e-07 60.8 74 39.2
Lj1P993T57 Lonicera japonica HOM05D000045 ORTHO05D000067 1.7e-07 60.8 100 32.0
Sed0024114 Sechium edule HOM05D000045 ORTHO05D000067 1.7e-07 60.8 78 38.5
Cfa008288 Carpinus fangiana HOM05D000045 ORTHO05D000067 2.2e-07 60.5 94 34.0
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 2.2e-07 60.5 176 24.4
MBI11_g16159_MAGBIO Magnolia biondii HOM05D039209 ORTHO05D004773 2.2e-07 60.5 113 32.7
Lj2g0023561 Lotus japonicus HOM05D000045 ORTHO05D000067 2.8e-07 60.1 163 26.4
Potri.015G139300 Populus trichocarpa HOM05D000045 ORTHO05D000067 2.8e-07 60.1 101 31.7
AL3G41840 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 4.9e-07 59.3 74 39.2
BolC8t48113H Brassica oleracea HOM05D000045 ORTHO05D000067 4.9e-07 59.3 177 25.4
Cpa.g.sc107.20 Carica papaya HOM05D000045 ORTHO05D000067 4.9e-07 59.3 101 31.7
Dinv28471 Davidia involucrata HOM05D000045 ORTHO05D000067 4.9e-07 59.3 78 39.7
CiPaw.04G032300 Carya illinoinensis HOM05D000045 ORTHO05D000067 6.3e-07 58.9 179 25.1
TWI31G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 6.3e-07 58.9 132 30.3
Manes.15G155500 Manihot esculenta HOM05D000045 ORTHO05D000067 1.1e-06 58.2 179 23.5
HPP92_013275 Vanilla planifolia HOM05D000045 ORTHO05D000067 1.1e-06 58.2 176 24.4
Atru.chr3.1377 Acer truncatum HOM05D000045 ORTHO05D004773 1.4e-06 57.8 71 40.8
CANSAT54G1925 Cannabis sativa HOM05D000045 ORTHO05D000067 1.4e-06 57.8 55 52.7
Migut.F01137 Erythranthe guttata HOM05D000045 ORTHO05D000067 1.8e-06 57.4 171 24.0
PSO447G0378 Papaver somniferum HOM05D000045 ORTHO05D000067 1.8e-06 57.4 67 40.3
COL.COLO4_14274 Corchorus olitorius HOM05D000045 ORTHO05D000835 2.4e-06 57.0 169 25.4
Gohir.A09G032100 Gossypium hirsutum HOM05D000045 ORTHO05D000067 2.4e-06 57.0 179 23.5
Aqoxy6G03033 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 3.1e-06 56.6 94 31.9
HPP92_019288 Vanilla planifolia HOM05D000045 ORTHO05D000067 3.1e-06 56.6 175 24.0
AUR62040076 Chenopodium quinoa HOM05D000045 ORTHO05D000067 4.1e-06 56.2 68 36.8
Psat6g199280 Pisum sativum HOM05D000045 ORTHO05D000067 4.1e-06 56.2 93 34.4
MBI14_g24330_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D004773 5.4e-06 55.8 70 40.0
MD01G1197600 Malus domestica HOM05D000045 ORTHO05D000067 5.4e-06 55.8 168 23.8
vmacro00851 Vaccinium macrocarpon HOM05D000045 ORTHO05D000067 5.4e-06 55.8 192 26.0
arahy.Tifrunner.gnm1.ann1.UU22QK Arachis hypogaea HOM05D005194 ORTHO05D003357 7.0e-06 55.5 255 22.7
Ca_25023_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000067 7.0e-06 55.5 177 25.4
Manes.06G144900 Manihot esculenta HOM05D000045 ORTHO05D000067 7.0e-06 55.5 91 33.0
Rhsim03G0118100 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.0e-06 55.5 129 30.2
THA.LOC104824729 Tarenaya hassleriana HOM05D000045 ORTHO05D000067 7.0e-06 55.5 94 30.9
TAR340G0001 Trochodendron aralioides HOM05D000045 ORTHO05D004773 7.0e-06 55.5 86 34.9
CSS0016804 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.2e-06 55.1 94 30.9
MBI03_g01211_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D000611 9.2e-06 55.1 241 24.5


User provided reference genes

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