Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0126400 Rhododendron simsii HOM05D003001 ORTHO05D003494 1.6e-53 212.6 117 100.0
Rhsim01G0127500 Rhododendron simsii HOM05D003001 ORTHO05D003494 3.4e-27 125.2 117 65.8
Rhsim05G0104000 Rhododendron simsii HOM05D003001 ORTHO05D003494 1.1e-17 93.6 50 92.0
vmacro18579 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 1.6e-16 89.7 57 75.4
HanXRQChr12g0380961 Helianthus annuus HOM05D003001 ORTHO05D003494 2.7e-16 89.0 88 53.4
Hma1.2p1_0784F.1_g217160 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 4.6e-16 88.2 48 89.6
CDE10G0920 Ceratophyllum demersum HOM05D003001 ORTHO05D003494 6.0e-16 87.8 51 80.4
HPP92_011190 Vanilla planifolia HOM05D003001 ORTHO05D003494 6.0e-16 87.8 51 78.4
HPP92_011196 Vanilla planifolia HOM05D003001 ORTHO05D003494 6.0e-16 87.8 51 78.4
arahy.Tifrunner.gnm1.ann1.IZH4BU Arachis hypogaea HOM05D003001 ORTHO05D003494 7.8e-16 87.4 86 57.0
Aqoxy6G00717 Aquilegia oxysepala HOM05D003001 ORTHO05D003494 1.0e-15 87.0 51 80.4
Cc07_g14610 Coffea canephora HOM05D003001 ORTHO05D003494 1.0e-15 87.0 48 85.4
EL10As13g24055 Beta vulgaris HOM05D003001 ORTHO05D003494 1.3e-15 86.7 52 75.0
MBI02_g33225_MAGBIO Magnolia biondii HOM05D003001 ORTHO05D003494 1.3e-15 86.7 50 84.0
Nn5g30003 Nelumbo nucifera HOM05D003001 ORTHO05D003494 1.3e-15 86.7 51 78.4
Dinv13233 Davidia involucrata HOM05D003001 ORTHO05D003494 1.7e-15 86.3 48 83.3
Lsat_1_v5_gn_5_45321 Lactuca sativa HOM05D003001 ORTHO05D003494 1.7e-15 86.3 50 78.0
Peaxi162Scf00044g01218 Petunia axillaris HOM05D003001 ORTHO05D003494 1.7e-15 86.3 50 78.0
THA.LOC104807168 Tarenaya hassleriana HOM05D003001 ORTHO05D003494 2.3e-15 85.9 48 83.3
PSO210G4835 Papaver somniferum HOM05D003001 ORTHO05D003494 3.0e-15 85.5 50 80.0
PGR004G1126 Punica granatum HOM05D003001 ORTHO05D003494 3.0e-15 85.5 47 89.4
Migut.L00160 Erythranthe guttata HOM05D003001 ORTHO05D003494 5.1e-15 84.7 48 81.2
ATR0684G114 Amborella trichopoda HOM05D003001 ORTHO05D003494 6.6e-15 84.3 51 78.4
Actinidia28043 Actinidia chinensis HOM05D003001 ORTHO05D003494 8.6e-15 84.0 48 85.4
Duzib052G0813 Durio zibethinus HOM05D003001 ORTHO05D008190 8.6e-15 84.0 48 83.3
SEGI_02839 Sequoiadendron giganteum HOM05D003001 ORTHO05D003494 1.1e-14 83.6 51 74.5
Cpa.g.sc55.75 Carica papaya HOM05D003001 ORTHO05D003494 1.5e-14 83.2 46 87.0
Hma1.2p1_0019F.1_g013790 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 1.5e-14 83.2 47 85.1
Rhsim08G0013400 Rhododendron simsii HOM05D003001 ORTHO05D003494 1.5e-14 83.2 50 76.0
SalBow5G0007 Salvia bowleyana HOM05D003001 ORTHO05D003494 1.9e-14 82.8 48 75.0
SalBow5G4959 Salvia bowleyana HOM05D003001 ORTHO05D003494 1.9e-14 82.8 48 75.0
TAR625G1497 Trochodendron aralioides HOM05D003001 ORTHO05D003494 1.9e-14 82.8 50 80.0
Cfa005658 Carpinus fangiana HOM05D003001 ORTHO05D003494 2.5e-14 82.4 47 85.1
Ciclev10024998m.g Citrus clementina HOM05D003001 ORTHO05D003494 2.5e-14 82.4 46 84.8
Gohir.A11G204500 Gossypium hirsutum HOM05D003001 ORTHO05D003494 2.5e-14 82.4 46 87.0
Gohir.D11G218900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 2.5e-14 82.4 46 87.0
Gorai.007G235000 Gossypium raimondii HOM05D003001 ORTHO05D003494 2.5e-14 82.4 46 87.0
DCAR_014204 Daucus carota HOM05D003001 ORTHO05D003494 3.3e-14 82.0 44 88.6
Lsat_1_v5_gn_7_82321 Lactuca sativa HOM05D003001 ORTHO05D003494 3.3e-14 82.0 51 74.5
Duzib147G0326 Durio zibethinus HOM05D003001 ORTHO05D003494 4.3e-14 81.6 46 84.8
Nitab4.5_0000128g0230 Nicotiana tabacum HOM05D003001 ORTHO05D003494 4.3e-14 81.6 48 79.2
Nitab4.5_0012818g0020 Nicotiana tabacum HOM05D003001 ORTHO05D003494 4.3e-14 81.6 48 79.2
Psat5g090840 Pisum sativum HOM05D003001 ORTHO05D003494 4.3e-14 81.6 48 83.3
Solyc05g051490.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 4.3e-14 81.6 50 72.0
Sopen05g029900 Solanum pennellii HOM05D003001 ORTHO05D003494 4.3e-14 81.6 50 72.0
Ah.02g126200 Amaranthus hybridus HOM05D003001 ORTHO05D003494 5.6e-14 81.3 48 79.2
Glyma.18G015100 Glycine max HOM05D003001 ORTHO05D003494 7.3e-14 80.9 50 76.0
Gohir.A03G175300 Gossypium hirsutum HOM05D003001 ORTHO05D003494 7.3e-14 80.9 48 79.2
Gorai.005G222800 Gossypium raimondii HOM05D003001 ORTHO05D003494 7.3e-14 80.9 48 79.2
Manes.13G096600 Manihot esculenta HOM05D003001 ORTHO05D003494 7.3e-14 80.9 44 86.4
Os02g0758100 Oryza sativa ssp. japonica HOM05D003001 ORTHO05D003494 7.3e-14 80.9 51 74.5
Thecc.02G134100 Theobroma cacao HOM05D003001 ORTHO05D003494 7.3e-14 80.9 47 80.9
TAR628G0470 Trochodendron aralioides HOM05D003001 ORTHO05D003494 7.3e-14 80.9 46 82.6
CAN.G712.16 Capsicum annuum HOM05D003001 ORTHO05D003494 9.5e-14 80.5 48 75.0
Medtr3g086840 Medicago truncatula HOM05D003001 ORTHO05D003494 9.5e-14 80.5 45 86.7
Oeu012395.2 Olea europaea HOM05D003001 ORTHO05D003494 9.5e-14 80.5 49 75.5
Thecc.01G095700 Theobroma cacao HOM05D003001 ORTHO05D003494 9.5e-14 80.5 46 82.6
TPR.G16016 Trifolium pratense HOM05D003001 ORTHO05D003494 9.5e-14 80.5 45 86.7
MSTRG.3756 Avicennia marina HOM05D003001 ORTHO05D003494 1.2e-13 80.1 47 78.7
arahy.Tifrunner.gnm1.ann1.P5X8WX Arachis hypogaea HOM05D003001 ORTHO05D003494 1.6e-13 79.7 48 77.1
CAN.G523.42 Capsicum annuum HOM05D003001 ORTHO05D003494 1.6e-13 79.7 85 52.9
Lj5A234T86 Lonicera japonica HOM05D003001 ORTHO05D003494 1.6e-13 79.7 51 76.5
Nitab4.5_0000863g0110 Nicotiana tabacum HOM05D003001 ORTHO05D003494 1.6e-13 79.7 56 69.6
Nitab4.5_0003959g0040 Nicotiana tabacum HOM05D003001 ORTHO05D003494 1.6e-13 79.7 56 69.6
Eucgr.I00540 Eucalyptus grandis HOM05D003001 ORTHO05D003494 2.1e-13 79.3 46 82.6
Peaxi162Scf01060g00143 Petunia axillaris HOM05D003001 ORTHO05D003494 2.1e-13 79.3 85 52.9
Potri.005G072100 Populus trichocarpa HOM05D003001 ORTHO05D003494 2.1e-13 79.3 45 82.2
Sabra05G0059000 Salix brachista HOM05D003001 ORTHO05D003494 2.1e-13 79.3 45 77.8
MSTRG.15725 Avicennia marina HOM05D003001 ORTHO05D003494 2.8e-13 79.0 50 70.0
Gohir.A12G015900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 2.8e-13 79.0 48 79.2
Gohir.D12G016200 Gossypium hirsutum HOM05D003001 ORTHO05D003494 2.8e-13 79.0 48 79.2
Gorai.008G016400 Gossypium raimondii HOM05D003001 ORTHO05D003494 2.8e-13 79.0 48 79.2
Lj6g0000592 Lotus japonicus HOM05D003001 ORTHO05D003494 2.8e-13 79.0 45 82.2
Nn1g05454 Nelumbo nucifera HOM05D003001 ORTHO05D003494 2.8e-13 79.0 49 77.6
RcHm_v2.0_Chr2g0112391 Rosa chinensis HOM05D003001 ORTHO05D003494 2.8e-13 79.0 46 78.3
Actinidia30837 Actinidia chinensis HOM05D003001 ORTHO05D003494 3.6e-13 78.6 50 72.0
arahy.Tifrunner.gnm1.ann1.7RAE92 Arachis hypogaea HOM05D003001 ORTHO05D003494 3.6e-13 78.6 45 84.4
Lj4g0024063 Lotus japonicus HOM05D003001 ORTHO05D003494 3.6e-13 78.6 46 87.0
Oeu019238.1 Olea europaea HOM05D003001 ORTHO05D003494 3.6e-13 78.6 51 74.5
Phvul.002G210800 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 3.6e-13 78.6 57 63.2
arahy.Tifrunner.gnm1.ann1.90QG24 Arachis hypogaea HOM05D003001 ORTHO05D003494 4.7e-13 78.2 48 75.0
Lj4g0023349 Lotus japonicus HOM05D003001 ORTHO05D003494 4.7e-13 78.2 46 78.3
Medtr4g094110 Medicago truncatula HOM05D003001 ORTHO05D003494 4.7e-13 78.2 46 76.1
Psat7g100360 Pisum sativum HOM05D003001 ORTHO05D003494 4.7e-13 78.2 46 76.1
Sabra07G0080200 Salix brachista HOM05D003001 ORTHO05D003494 4.7e-13 78.2 45 80.0
Hund16555 Selenicereus undatus HOM05D003001 ORTHO05D003494 4.7e-13 78.2 52 67.3
Lsat_1_v5_gn_9_116840 Lactuca sativa HOM05D003001 ORTHO05D003494 6.2e-13 77.8 42 81.0
Atru.chr3.1345 Acer truncatum HOM05D003001 ORTHO05D003494 8.1e-13 77.4 46 80.4
Lalb_Chr07g0185321 Lupinus albus HOM05D003001 ORTHO05D003494 8.1e-13 77.4 46 82.6
CSS0000411 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D000004 1.1e-12 77.0 44 84.1
CSS0013093 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D000004 1.1e-12 77.0 44 84.1
Dinv09007 Davidia involucrata HOM05D003001 ORTHO05D003494 1.1e-12 77.0 47 78.7
FAN19G2704 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.1e-12 77.0 46 76.1
FAN23G1555 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.1e-12 77.0 46 76.1
FAN26G0078 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.1e-12 77.0 46 76.1
FAN28G1326 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.1e-12 77.0 46 76.1
QL06p048139 Quercus lobata HOM05D003001 ORTHO05D003494 1.1e-12 77.0 46 76.1
THA.LOC104798827 Tarenaya hassleriana HOM05D003001 ORTHO05D003494 1.1e-12 77.0 46 76.1
TWI74G1411 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 1.1e-12 77.0 45 82.2
VMungo0251G3475 Vigna mungo HOM05D003001 ORTHO05D003494 1.1e-12 77.0 57 61.4
Cfa002601 Carpinus fangiana HOM05D003001 ORTHO05D003494 1.4e-12 76.6 46 76.1
Prupe.6G193100 Prunus persica HOM05D003001 ORTHO05D003494 1.4e-12 76.6 46 73.9
Sopen01g047980 Solanum pennellii HOM05D003001 ORTHO05D003494 1.4e-12 76.6 56 66.1
COL.COLO4_32310 Corchorus olitorius HOM05D003001 ORTHO05D003494 1.8e-12 76.3 44 81.8
Lj2A540G45 Lonicera japonica HOM05D003001 ORTHO05D003494 1.8e-12 76.3 44 79.5
MD01G1035600 Malus domestica HOM05D003001 ORTHO05D003494 1.8e-12 76.3 46 73.9
MD15G1320200 Malus domestica HOM05D003001 ORTHO05D003494 1.8e-12 76.3 46 73.9
Potri.007G096900 Populus trichocarpa HOM05D003001 ORTHO05D003494 1.8e-12 76.3 45 77.8
TPR.G2848 Trifolium pratense HOM05D003001 ORTHO05D003494 1.8e-12 76.3 46 73.9
TWI53G0751 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 1.8e-12 76.3 45 82.2
Glyma.11G242000 Glycine max HOM05D003001 ORTHO05D003494 2.3e-12 75.9 45 82.2
CiPaw.05G032800 Carya illinoinensis HOM05D003001 ORTHO05D003494 3.1e-12 75.5 45 80.0
Ca_16510_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 3.1e-12 75.5 44 84.1
ClCG01G018590 Citrullus lanatus HOM05D003001 ORTHO05D003494 3.1e-12 75.5 45 80.0
Haze_24852 Corylus avellana HOM05D003001 ORTHO05D003494 3.1e-12 75.5 42 81.0
HanXRQChr13g0420801 Helianthus annuus HOM05D003001 ORTHO05D003494 3.1e-12 75.5 42 85.7
Lalb_Chr05g0217601 Lupinus albus HOM05D003001 ORTHO05D003494 3.1e-12 75.5 48 72.9
GSVIVG01003426001 Vitis vinifera HOM05D003001 ORTHO05D003494 3.1e-12 75.5 46 76.1
GSVIVG01003429001 Vitis vinifera HOM05D003001 ORTHO05D003494 3.1e-12 75.5 46 76.1
AL8G42860 Arabidopsis lyrata HOM05D003001 ORTHO05D003494 4.0e-12 75.1 46 71.7
AT5G65290 Arabidopsis thaliana HOM05D003001 ORTHO05D003494 4.0e-12 75.1 46 71.7
A06p32150 Brassica napus HOM05D003001 ORTHO05D003494 4.0e-12 75.1 46 71.7
BraA06t26143Z Brassica rapa HOM05D003001 ORTHO05D003494 4.0e-12 75.1 46 71.7
Thhalv10003703m.g Eutrema salsugineum HOM05D003001 ORTHO05D003494 4.0e-12 75.1 46 71.7
Medtr8g089925 Medicago truncatula HOM05D003001 ORTHO05D003494 4.0e-12 75.1 46 82.6
Sp2g28400 Schrenkiella parvula HOM05D003001 ORTHO05D003494 4.0e-12 75.1 46 71.7
BcaB02g09889 Brassica carinata HOM05D003001 ORTHO05D003494 5.2e-12 74.7 46 71.7
BolC3t18338H Brassica oleracea HOM05D003001 ORTHO05D003494 5.2e-12 74.7 46 71.7
SHI21929 Sapria himalayana HOM05D003001 ORTHO05D003494 5.2e-12 74.7 44 79.5
Solyc01g105510.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 5.2e-12 74.7 56 64.3
BcaC03g18323 Brassica carinata HOM05D003001 ORTHO05D003494 6.8e-12 74.3 46 71.7
A02p43820 Brassica napus HOM05D003001 ORTHO05D003494 6.8e-12 74.3 46 71.7
C02p63980 Brassica napus HOM05D003001 ORTHO05D003494 6.8e-12 74.3 46 71.7
BolC2t12465H Brassica oleracea HOM05D003001 ORTHO05D003494 6.8e-12 74.3 46 71.7
BraA02t09307Z Brassica rapa HOM05D003001 ORTHO05D003494 6.8e-12 74.3 46 71.7
Carub.0008s2617 Capsella rubella HOM05D003001 ORTHO05D003494 6.8e-12 74.3 46 71.7
MELO3C007738.2 Cucumis melo HOM05D003001 ORTHO05D003494 6.8e-12 74.3 45 77.8
CsaV3_6G045250 Cucumis sativus L. HOM05D003001 ORTHO05D003494 6.8e-12 74.3 45 77.8
Sed0022187 Sechium edule HOM05D003001 ORTHO05D003494 6.8e-12 74.3 45 77.8
Zm00001eb193930 Zea mays HOM05D003001 ORTHO05D003494 8.9e-12 73.9 51 70.6
CARHR279240 Cardamine hirsuta HOM05D003001 ORTHO05D003494 1.2e-11 73.6 46 69.6
Cc02_g21210 Coffea canephora HOM05D003001 ORTHO05D003494 1.2e-11 73.6 42 83.3
DCAR_001772 Daucus carota HOM05D003001 ORTHO05D003494 1.2e-11 73.6 50 70.0
VMungo0251G0868 Vigna mungo HOM05D003001 ORTHO05D003494 1.2e-11 73.6 46 78.3
Psat7g056400 Pisum sativum HOM05D003001 ORTHO05D003494 1.5e-11 73.2 46 80.4
unitig_748.g8484 Utricularia gibba HOM05D003001 ORTHO05D003494 1.5e-11 73.2 46 73.9
Aa31LG1G16660 Aethionema arabicum HOM05D003001 ORTHO05D003494 2.0e-11 72.8 44 72.7
Ca_08989_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 2.0e-11 72.8 42 85.7
Oeu032367.1 Olea europaea HOM05D003001 ORTHO05D003494 2.0e-11 72.8 44 75.0
AUR62027205 Chenopodium quinoa HOM05D003001 ORTHO05D003494 2.6e-11 72.4 44 77.3
Glyma.08G133200 Glycine max HOM05D003001 ORTHO05D003494 3.4e-11 72.0 46 78.3
Gorai.008G090800 Gossypium raimondii HOM05D003001 ORTHO05D003494 3.4e-11 72.0 38 86.8
Sed0027008 Sechium edule HOM05D003001 ORTHO05D003494 3.4e-11 72.0 45 75.6
Phvul.002G260900 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 7.5e-11 70.9 45 77.8
unitig_61.g26059 Utricularia gibba HOM05D003001 ORTHO05D003494 7.5e-11 70.9 51 72.5
Gohir.D12G082300 Gossypium hirsutum HOM05D003001 ORTHO05D003494 9.9e-11 70.5 38 84.2
arahy.Tifrunner.gnm1.ann1.FN9T2Y Arachis hypogaea HOM05D003001 ORTHO05D003494 1.3e-10 70.1 48 70.8
arahy.Tifrunner.gnm1.ann1.U0JFG5 Arachis hypogaea HOM05D003001 ORTHO05D003494 1.3e-10 70.1 48 70.8
C03p60790 Brassica napus HOM05D003001 ORTHO05D003494 1.7e-10 69.7 48 68.8
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 6.4e-10 67.8 34 88.2
Lalb_Chr11g0075461 Lupinus albus HOM05D003001 ORTHO05D003494 1.1e-09 67.0 44 75.0
TPR.G6243 Trifolium pratense HOM05D003001 ORTHO05D003494 1.9e-09 66.2 46 71.7
ECA236G2627 Erigeron canadensis HOM05D003001 ORTHO05D003494 7.1e-09 64.3 45 64.4
SMO144G0094 Selaginella moellendorffii HOM05D003001 ORTHO05D003494 1.2e-08 63.5 46 67.4
Cfa008444 Carpinus fangiana HOM05D003001 ORTHO05D003494 2.7e-08 62.4 42 71.4
SalBow5G0708 Salvia bowleyana HOM05D003001 ORTHO05D003494 6.0e-08 61.2 46 67.4
Zm00001eb279320 Zea mays HOM05D003001 ORTHO05D003494 6.0e-08 61.2 48 62.5
Mapoly0140s0040 Marchantia polymorpha HOM05D003001 ORTHO05D003494 2.5e-06 55.8 46 56.5
ECA246G2784 Erigeron canadensis HOM05D003001 ORTHO05D003494 5.6e-06 54.7 39 66.7
Pp3c1_14780 Physcomitrium patens HOM05D003001 ORTHO05D003494 5.6e-06 54.7 46 56.5


User provided reference genes

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