Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 4.0e-80 303.1 145 100.0
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 7.0e-40 169.5 138 61.6
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 2.6e-31 141.0 97 74.2
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 5.5e-29 133.3 139 50.4
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 4.5e-23 113.6 133 46.6
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 1.6e-20 105.1 148 43.2
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 2.1e-20 104.8 148 43.2
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 4.4e-18 97.1 143 39.9
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 7.5e-18 96.3 146 40.4
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 1.1e-16 92.4 67 61.2
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 1.8e-16 91.7 138 40.6
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 4.1e-16 90.5 137 40.1
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 1.2e-15 89.0 137 40.1
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 2.7e-15 87.8 118 42.4
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 3.5e-15 87.4 75 56.0
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 1.0e-14 85.9 69 59.4
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 3.8e-14 84.0 72 59.7
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 1.1e-13 82.4 128 42.2
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 1.9e-13 81.6 104 45.2
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 1.9e-13 81.6 112 42.0
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 2.5e-13 81.3 75 53.3
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 4.2e-13 80.5 115 44.3
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 4.2e-13 80.5 75 54.7
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 5.5e-13 80.1 72 55.6
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 5.5e-13 80.1 83 48.2
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 9.5e-13 79.3 79 54.4
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 9.5e-13 79.3 72 59.7
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 2.1e-12 78.2 75 53.3
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 4.7e-12 77.0 75 52.0
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 6.1e-12 76.6 65 63.1
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 1.4e-11 75.5 66 54.5
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 2.3e-11 74.7 69 53.6
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 3.0e-11 74.3 100 43.0
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 3.0e-11 74.3 113 38.1
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 3.0e-11 74.3 129 36.4
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 4.0e-11 73.9 114 38.6
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 8.9e-11 72.8 43 83.7
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 8.9e-11 72.8 68 54.4
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 8.9e-11 72.8 68 54.4
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 2.0e-10 71.6 68 54.4
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 2.0e-10 71.6 68 54.4
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 4.4e-10 70.5 70 54.3
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 3.7e-09 67.4 96 41.7
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 4.9e-09 67.0 61 55.7
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 6.3e-09 66.6 118 36.4
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 8.3e-09 66.2 70 50.0
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 1.1e-08 65.9 60 53.3
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.4e-08 65.5 118 37.3
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 1.8e-08 65.1 133 33.1
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 4.1e-08 63.9 138 35.5
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 4.1e-08 63.9 86 40.7
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 9.2e-08 62.8 131 35.1
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 9.2e-08 62.8 132 34.8
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 2.0e-07 61.6 53 54.7
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 2.0e-07 61.6 121 33.1
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 2.7e-07 61.2 67 46.3
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 2.7e-07 61.2 43 65.1
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 2.7e-07 61.2 43 65.1
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 3.5e-07 60.8 130 34.6
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 4.6e-07 60.5 66 43.9
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 1.3e-06 58.9 43 65.1
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 1.3e-06 58.9 67 44.8
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 1.3e-06 58.9 67 44.8
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 2.3e-06 58.2 67 44.8
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 2.3e-06 58.2 65 43.1
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 2.3e-06 58.2 65 43.1
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 2.9e-06 57.8 67 44.8
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 2.9e-06 57.8 115 31.3
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 2.9e-06 57.8 67 41.8
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 3.9e-06 57.4 67 44.8
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 3.9e-06 57.4 65 43.1
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 6.6e-06 56.6 67 40.3
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 6.6e-06 56.6 123 32.5
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 6.6e-06 56.6 49 55.1
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 8.6e-06 56.2 67 43.3


User provided reference genes

Program Settings