Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 0.0e+00 1116.3 575 100.0
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.1e-296 1022.7 575 88.5
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.8e-267 925.6 575 79.1
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 3.0e-254 881.7 575 74.4
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 7.5e-245 850.5 575 73.9
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.2e-242 843.2 577 72.6
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 8.9e-230 800.4 575 68.3
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 4.9e-228 794.7 574 68.8
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 2.4e-227 792.3 575 67.5
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 2.4e-227 792.3 575 68.7
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.9e-224 782.7 575 66.4
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.4e-222 776.5 577 67.2
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 2.3e-222 775.8 574 67.1
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 3.1e-222 775.4 575 66.1
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 5.2e-222 774.6 575 66.1
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.2e-221 773.5 576 66.8
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 4.4e-221 771.5 578 67.0
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 9.8e-221 770.4 575 65.7
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 6.0e-218 761.1 575 65.9
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 1.7e-217 759.6 576 65.3
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.1e-216 756.9 576 64.6
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.5e-216 756.5 576 64.8
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.5e-216 755.7 576 64.6
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 8.0e-215 750.7 570 67.0
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 4.0e-214 748.4 576 63.9
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 1.5e-213 746.5 587 65.1
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 1.7e-212 743.0 576 64.1
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.9e-212 741.5 576 63.2
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 6.4e-212 741.1 576 62.8
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 8.3e-212 740.7 575 64.5
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 5.4e-211 738.0 575 63.1
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 9.2e-211 737.3 576 65.1
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.2e-210 736.9 575 62.6
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.6e-210 736.5 577 63.6
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 4.6e-210 734.9 575 63.0
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 5.1e-209 731.5 575 63.8
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.1e-208 730.3 594 62.6
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.5e-208 729.9 578 63.8
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 1.9e-208 729.6 575 63.5
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 3.3e-208 728.8 575 63.7
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 1.6e-207 726.5 577 62.9
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 2.1e-207 726.1 575 62.4
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 2.1e-207 726.1 578 61.4
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 8.1e-207 724.2 604 60.9
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 8.1e-207 724.2 576 63.0
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.1e-206 723.8 575 62.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.8e-206 723.0 608 61.7
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.8e-206 723.0 577 62.7
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.8e-206 723.0 575 61.9
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 6.8e-206 721.1 575 62.1
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 6.8e-206 721.1 575 61.9
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 2.0e-205 719.5 575 62.8
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.0e-205 719.5 575 63.1
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.2e-204 716.1 576 61.5
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 3.2e-203 712.2 575 61.9
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 4.1e-203 711.8 576 60.4
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 7.1e-203 711.1 575 63.0
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 2.7e-202 709.1 575 62.3
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.7e-201 706.4 576 63.4
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 2.3e-201 706.1 575 63.1
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.1e-198 697.2 575 60.7
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.5e-197 693.3 575 60.7
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 5.8e-197 691.4 575 61.7
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 9.9e-197 690.6 517 66.7
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 5.4e-195 684.9 575 61.0
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 6.0e-194 681.4 575 59.1
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 8.1e-191 671.0 578 59.5
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.4e-190 670.2 578 59.9
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 6.9e-190 667.9 578 59.3
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 4.9e-188 661.8 578 58.8
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 6.4e-188 661.4 577 58.1
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 1.6e-186 656.8 645 53.6
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 7.3e-184 647.9 576 56.9
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.6e-183 646.7 605 56.7
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.1e-182 644.0 578 58.0
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 5.3e-182 641.7 536 60.6
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 2.1e-178 629.8 575 54.8
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 2.3e-177 626.3 533 59.8
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.5e-176 622.9 497 62.6
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.4e-174 617.1 577 55.3
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.4e-174 617.1 577 55.3
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 2.6e-173 612.8 502 61.4
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 2.9e-172 609.4 577 52.9
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 1.1e-171 607.4 680 49.6
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 4.2e-171 605.5 553 56.1
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 3.5e-170 602.4 577 54.6
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 4.6e-170 602.1 552 56.2
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 1.3e-169 600.5 577 54.4
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 1.3e-169 600.5 577 54.4
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.1e-167 593.2 439 66.3
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.0e-165 586.6 429 67.8
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 6.5e-164 581.6 575 49.7
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.0e-161 574.3 475 60.4
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 7.4e-160 568.2 551 54.8
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 5.7e-152 542.0 429 63.6
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 5.9e-149 531.9 394 65.7
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.1e-147 527.7 394 64.2
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.4e-142 510.8 498 55.2
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 3.6e-138 496.1 554 48.2
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.6e-136 490.0 472 56.8
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 3.8e-132 476.1 577 45.6
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.2e-123 446.4 368 60.9
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 1.0e-121 441.4 356 60.7
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.6e-120 436.8 461 49.5
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 7.3e-115 418.7 297 67.0
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 9.5e-115 418.3 602 39.5
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 3.3e-107 393.3 578 39.6
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 2.6e-104 383.6 603 39.5
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.6e-98 363.2 474 44.3
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 3.1e-65 253.8 245 53.9
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.1e-59 235.3 385 38.4
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 3.3e-59 233.8 296 45.6
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 1.8e-57 228.0 208 58.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 2.7e-53 214.2 527 30.0
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 1.5e-48 198.4 164 62.2
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 7.4e-35 152.9 152 52.0
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 1.3e-34 152.1 99 71.7
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 6.3e-34 149.8 217 41.9
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 9.4e-30 136.0 613 23.3
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 9.4e-30 136.0 130 52.3
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 6.1e-29 133.3 224 40.2
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 6.1e-29 133.3 459 24.2
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 4.4e-27 127.1 74 75.7
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.3e-26 125.6 115 53.0
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.3e-26 125.6 115 53.0
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 1.8e-25 121.7 128 50.8
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.2e-23 114.8 80 70.0
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 6.5e-23 113.2 73 74.0
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 2.7e-21 107.8 378 23.3
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 4.7e-21 107.1 80 67.5
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-15 88.2 68 63.2
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 2.5e-14 84.7 89 49.4
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 4.2e-14 84.0 52 73.1
CSS0024475 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D113139 1.2e-11 75.9 60 63.3
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 4.8e-10 70.5 45 71.1
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 1.4e-09 68.9 263 25.1
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 1.6e-08 65.5 51 60.8
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 2.7e-08 64.7 70 48.6


User provided reference genes

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