Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0115300 Rhododendron simsii HOM05D000072 ORTHO05D000717 2.2e-93 345.5 159 100.0
Rhsim01G0116200 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.6e-35 153.3 154 54.5
Rhsim03G0203200 Rhododendron simsii HOM05D000072 ORTHO05D000026 2.2e-21 106.3 96 53.1
Rhsim03G0203600 Rhododendron simsii HOM05D000072 ORTHO05D000026 4.2e-20 102.1 92 55.4
Rhsim01G0115700 Rhododendron simsii HOM05D000072 ORTHO05D000026 7.1e-20 101.3 64 76.6
Rhsim03G0203800 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.2e-19 100.5 96 54.2
Rhsim03G0205300 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.2e-19 100.5 94 53.2
Rhsim03G0206600 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.0e-18 97.4 94 53.2
Rhsim03G0206900 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.7e-18 96.7 93 50.5
vmacro06549 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 3.6e-16 89.0 93 48.4
Rhsim03G0205900 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.8e-15 86.7 85 54.1
Rhsim03G0205700 Rhododendron simsii HOM05D000072 ORTHO05D000026 6.9e-15 84.7 87 46.0
Rhsim09G0156500 Rhododendron simsii HOM05D000072 ORTHO05D000026 9.9e-14 80.9 91 47.3
Rhsim03G0201900 Rhododendron simsii HOM05D000354 ORTHO05D000717 1.9e-12 76.6 71 54.9
Rhsim03G0201600 Rhododendron simsii HOM05D000072 ORTHO05D000026 3.2e-12 75.9 84 51.2
Haze_08159 Corylus avellana HOM05D000072 ORTHO05D000717 2.1e-11 73.2 90 44.4
CSS0004351 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 4.6e-11 72.0 99 38.4
Haze_00873 Corylus avellana HOM05D000072 ORTHO05D000026 4.6e-11 72.0 97 47.4
CSS0043145 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 1.0e-10 70.9 102 40.2
Rhsim03G0204500 Rhododendron simsii HOM05D000072 ORTHO05D000717 1.0e-10 70.9 66 54.5
CSS0046051 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 1.3e-10 70.5 106 42.5
GSVIVG01038721001 Vitis vinifera HOM05D000072 ORTHO05D000026 1.3e-10 70.5 91 44.0
MSTRG.8516 Avicennia marina HOM05D000354 ORTHO05D000717 2.3e-10 69.7 96 41.7
Rhsim03G0205000 Rhododendron simsii HOM05D000072 ORTHO05D000026 5.1e-10 68.6 84 45.2
Dinv05487 Davidia involucrata HOM05D000072 ORTHO05D000717 6.6e-10 68.2 91 35.2
CAN.G108.60 Capsicum annuum HOM05D000072 ORTHO05D000026 1.5e-09 67.0 94 39.4
Prupe.2G089000 Prunus persica HOM05D000072 ORTHO05D000026 1.9e-09 66.6 82 37.8
vmacro06551 Vaccinium macrocarpon HOM05D000072 ORTHO05D000026 1.9e-09 66.6 74 50.0
CSS0002836 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 2.5e-09 66.2 90 46.7
Haze_10141 Corylus avellana HOM05D000072 ORTHO05D000026 4.3e-09 65.5 143 32.2
Prupe.2G088900 Prunus persica HOM05D000072 ORTHO05D000026 4.3e-09 65.5 82 39.0
Haze_10142 Corylus avellana HOM05D000072 ORTHO05D000026 5.6e-09 65.1 89 41.6
CSS0033042 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 1.6e-08 63.5 86 44.2
DCAR_027568 Daucus carota HOM05D000072 ORTHO05D000026 2.1e-08 63.2 81 39.5
Haze_08152 Corylus avellana HOM05D000072 ORTHO05D000026 2.8e-08 62.8 91 41.8
CSS0010548 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 3.6e-08 62.4 83 42.2
Haze_10148 Corylus avellana HOM05D000072 ORTHO05D000026 3.6e-08 62.4 101 35.6
Nitab4.5_0000714g0030 Nicotiana tabacum HOM05D000072 ORTHO05D000026 3.6e-08 62.4 98 36.7
Nitab4.5_0016580g0010 Nicotiana tabacum HOM05D000072 ORTHO05D000026 4.8e-08 62.0 85 40.0
Prupe.2G088400 Prunus persica HOM05D000072 ORTHO05D000026 4.8e-08 62.0 82 37.8
Haze_12330 Corylus avellana HOM05D000354 ORTHO05D000717 6.2e-08 61.6 108 37.0
Haze_10147 Corylus avellana HOM05D000072 ORTHO05D000026 8.1e-08 61.2 143 31.5
CSS0038323 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 1.1e-07 60.8 100 41.0
CiPaw.05G255200 Carya illinoinensis HOM05D000072 ORTHO05D000026 1.1e-07 60.8 81 38.3
Peaxi162Scf00550g00443 Petunia axillaris HOM05D000072 ORTHO05D000026 1.1e-07 60.8 157 26.8
QL09p009762 Quercus lobata HOM05D000072 ORTHO05D000026 1.1e-07 60.8 120 33.3
MD02G1249800 Malus domestica HOM05D000072 ORTHO05D000026 2.4e-07 59.7 86 37.2
Potri.015G018200 Populus trichocarpa HOM05D000072 ORTHO05D000026 2.4e-07 59.7 95 34.7
Prupe.2G047400 Prunus persica HOM05D000072 ORTHO05D000026 2.4e-07 59.7 90 37.8
Haze_00174 Corylus avellana HOM05D000072 ORTHO05D000026 3.1e-07 59.3 131 35.1
Haze_08155 Corylus avellana HOM05D000072 ORTHO05D000026 3.1e-07 59.3 89 37.1
Haze_27495 Corylus avellana HOM05D000354 ORTHO05D000717 3.1e-07 59.3 88 40.9
Manes.04G075500 Manihot esculenta HOM05D000072 ORTHO05D000026 3.1e-07 59.3 79 38.0
CSS0002832 Camellia sinensis var. sinensis HOM05D000354 ORTHO05D000717 4.0e-07 58.9 84 36.9
CSS0026422 Camellia sinensis var. sinensis HOM05D000072 ORTHO05D000026 4.0e-07 58.9 101 40.6
FAN22G0084 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.3e-07 58.5 90 38.9
Nitab4.5_0000714g0050 Nicotiana tabacum HOM05D000072 ORTHO05D000026 5.3e-07 58.5 136 33.1
Prupe.2G088200 Prunus persica HOM05D000072 ORTHO05D000026 5.3e-07 58.5 87 39.1
MD02G1246600 Malus domestica HOM05D000072 ORTHO05D000026 6.9e-07 58.2 81 37.0
QL09p010101 Quercus lobata HOM05D000072 ORTHO05D000026 9.0e-07 57.8 93 36.6
RcHm_v2.0_Chr1g0328351 Rosa chinensis HOM05D000072 ORTHO05D000026 9.0e-07 57.8 88 35.2
MD02G1247200 Malus domestica HOM05D000072 ORTHO05D000026 1.2e-06 57.4 86 34.9
Nitab4.5_0002492g0080 Nicotiana tabacum HOM05D000072 ORTHO05D000026 2.0e-06 56.6 88 36.4
QL07p000829 Quercus lobata HOM05D000072 ORTHO05D000026 2.0e-06 56.6 101 33.7
Solyc03g083470.3 Solanum lycopersicum HOM05D000072 ORTHO05D000026 2.0e-06 56.6 96 35.4
CSS0020324 Camellia sinensis var. sinensis HOM05D000354 ORTHO05D000717 2.6e-06 56.2 86 36.0
CSS0021311 Camellia sinensis var. sinensis HOM05D000354 ORTHO05D000717 2.6e-06 56.2 86 36.0
Haze_03619 Corylus avellana HOM05D000072 ORTHO05D000026 3.4e-06 55.8 130 29.2
FvH4_7g06040 Fragaria vesca HOM05D000072 ORTHO05D000026 4.5e-06 55.5 89 34.8
Prupe.2G087200 Prunus persica HOM05D000072 ORTHO05D000026 5.8e-06 55.1 86 33.7
TAR375G0383 Trochodendron aralioides HOM05D000072 ORTHO05D000026 5.8e-06 55.1 93 38.7
CiPaw.04G095900 Carya illinoinensis HOM05D000072 ORTHO05D000026 7.6e-06 54.7 81 33.3
Cc02_g28680 Coffea canephora HOM05D000072 ORTHO05D000026 7.6e-06 54.7 84 38.1
Sopen03g023240 Solanum pennellii HOM05D000072 ORTHO05D000026 7.6e-06 54.7 98 33.7
Cc02_g28640 Coffea canephora HOM05D000072 ORTHO05D000026 9.9e-06 54.3 75 40.0
FAN07G2132 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.9e-06 54.3 89 34.8
MD02G1246100 Malus domestica HOM05D000072 ORTHO05D000026 9.9e-06 54.3 96 34.4


User provided reference genes

Program Settings