Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 8.8e-34 146.4 73 100.0
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.8e-31 138.7 73 93.2
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 2.0e-30 135.2 73 87.7
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 6.1e-27 123.6 67 88.1
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.2e-25 119.4 66 86.4
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 4.4e-25 117.5 71 83.1
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 4.1e-23 110.9 71 77.5
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 7.0e-23 110.2 74 74.3
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 1.3e-21 105.9 73 76.7
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 2.3e-21 105.1 73 72.6
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 2.9e-21 104.8 73 76.7
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 3.8e-21 104.4 63 77.8
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 6.6e-21 103.6 73 71.2
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 6.6e-21 103.6 63 77.8
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 8.6e-21 103.2 77 67.5
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 8.6e-21 103.2 77 67.5
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 8.6e-21 103.2 77 67.5
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 8.6e-21 103.2 60 80.0
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 1.1e-20 102.8 66 75.8
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 1.1e-20 102.8 66 75.8
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 1.1e-20 102.8 73 75.3
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 1.5e-20 102.4 66 71.2
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 1.9e-20 102.1 65 76.9
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.9e-20 102.1 65 76.9
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.5e-20 101.7 66 74.2
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 3.3e-20 101.3 70 68.6
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 4.2e-20 100.9 63 76.2
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 4.2e-20 100.9 76 71.1
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 4.2e-20 100.9 66 69.7
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 4.2e-20 100.9 66 69.7
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 7.2e-20 100.1 72 72.2
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 7.2e-20 100.1 72 72.2
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 7.2e-20 100.1 72 72.2
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 2.1e-19 98.6 56 83.9
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 2.1e-19 98.6 71 69.0
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.1e-19 98.6 66 71.2
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 2.8e-19 98.2 77 66.2
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 3.6e-19 97.8 69 75.4
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 3.6e-19 97.8 58 77.6
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 6.1e-19 97.1 66 71.2
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 6.1e-19 97.1 73 67.1
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 6.1e-19 97.1 77 64.9
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 6.1e-19 97.1 77 64.9
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 1.0e-18 96.3 65 73.8
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 1.0e-18 96.3 73 67.1
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 1.0e-18 96.3 68 70.6
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 1.4e-18 95.9 70 74.3
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 1.8e-18 95.5 65 72.3
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 2.3e-18 95.1 74 67.6
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 2.3e-18 95.1 63 73.0
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 2.3e-18 95.1 66 71.2
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 2.3e-18 95.1 77 64.9
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 3.0e-18 94.7 66 69.7
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 4.0e-18 94.4 66 69.7
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 4.0e-18 94.4 77 64.9
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 5.2e-18 94.0 66 69.7
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 5.2e-18 94.0 66 68.2
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 5.2e-18 94.0 66 68.2
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 6.8e-18 93.6 67 68.7
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 6.8e-18 93.6 67 68.7
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 1.2e-17 92.8 63 73.0
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.2e-17 92.8 66 68.2
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 1.2e-17 92.8 66 66.7
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 1.2e-17 92.8 69 65.2
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.2e-17 92.8 66 68.2
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 1.2e-17 92.8 77 62.3
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 1.2e-17 92.8 79 63.3
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 1.5e-17 92.4 64 71.9
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 2.0e-17 92.0 63 71.4
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 2.0e-17 92.0 66 66.7
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 2.0e-17 92.0 65 67.7
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 2.6e-17 91.7 66 68.2
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 3.4e-17 91.3 66 69.7
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 4.4e-17 90.9 63 71.4
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 5.7e-17 90.5 66 65.2
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 2.2e-16 88.6 56 76.8
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.1e-15 86.3 66 63.6
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 1.1e-15 86.3 68 64.7
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 1.4e-15 85.9 72 59.7
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 4.1e-15 84.3 72 59.7
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 5.4e-15 84.0 69 62.3
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 1.6e-14 82.4 64 64.1
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 3.5e-14 81.3 67 55.2
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 2.3e-13 78.6 66 62.1
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 2.3e-13 78.6 66 63.6
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 2.9e-13 78.2 68 60.3
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 3.9e-13 77.8 57 70.2
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 5.0e-13 77.4 65 61.5
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 5.0e-13 77.4 65 61.5
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.6e-11 72.4 50 72.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 8.0e-11 70.1 50 78.0
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.0e-10 69.7 68 52.9
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 6.8e-10 67.0 53 69.8
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 2.6e-09 65.1 50 68.0
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 5.8e-09 63.9 50 66.0
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 8.3e-08 60.1 51 66.7
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 2.4e-07 58.5 50 66.0
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 4.1e-07 57.8 54 59.3
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 1.2e-06 56.2 50 64.0
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 2.0e-06 55.5 38 78.9
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 4.6e-06 54.3 43 62.8
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 4.6e-06 54.3 50 66.0


User provided reference genes

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