Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 0.0e+00 2248.4 1139 100.0
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 0.0e+00 2118.2 1139 95.1
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 0.0e+00 1866.3 1172 82.3
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 0.0e+00 1481.5 1174 66.3
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 0.0e+00 1289.6 1183 60.1
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 0.0e+00 1280.4 1182 59.9
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 0.0e+00 1075.5 1181 51.6
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 3.4e-310 1068.5 1187 50.9
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.1e-292 1010.4 906 60.6
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.4e-281 972.2 1182 48.0
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.7e-277 959.9 1190 47.4
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.5e-276 956.8 1190 47.3
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 6.2e-267 924.9 1186 45.4
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 4.4e-265 918.7 1186 45.4
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.1e-260 904.0 1199 46.1
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.6e-259 900.2 1177 44.8
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.5e-257 893.6 1186 45.4
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 5.8e-257 891.7 1185 44.1
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 1.4e-250 870.5 1169 44.2
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.5e-249 867.1 1185 45.1
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.1e-242 844.3 1166 43.6
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 1.1e-239 834.3 1183 41.9
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 1.4e-239 833.9 1157 43.6
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 3.2e-239 832.8 1169 42.9
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.1e-238 830.1 1171 43.1
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.3e-237 826.6 1169 42.8
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.3e-237 826.6 1169 42.8
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.8e-235 819.7 1145 43.1
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.4e-234 817.4 1170 42.2
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 5.3e-234 815.5 1188 42.0
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 8.4e-232 808.1 1190 41.9
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.5e-228 797.3 1222 41.4
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 4.3e-228 795.8 1176 41.8
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 9.6e-228 794.7 1223 41.5
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 4.0e-226 789.3 1174 41.7
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 2.0e-225 786.9 1164 41.8
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 3.4e-225 786.2 1171 42.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.6e-222 777.3 1174 42.5
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 7.9e-222 775.0 1175 41.8
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.0e-221 774.6 1019 45.4
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.8e-221 773.9 1121 43.8
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 2.5e-220 770.0 1099 43.6
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 3.3e-220 769.6 1182 40.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 4.3e-220 769.2 1188 40.7
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.6e-219 767.3 1173 41.3
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 8.2e-219 765.0 1191 40.7
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.7e-216 757.3 1184 41.2
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 2.7e-214 750.0 1178 40.8
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.9e-214 748.4 1187 40.0
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 6.7e-213 745.3 1188 39.6
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.3e-212 743.0 1179 39.5
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 9.7e-212 741.5 1258 39.7
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.3e-211 741.1 1179 39.8
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 4.8e-211 739.2 1183 39.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 1.4e-210 737.6 1172 40.1
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.2e-209 734.6 1004 45.2
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.5e-209 734.2 1182 39.7
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 7.7e-209 731.9 1176 40.4
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 7.2e-207 725.3 1185 40.3
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.6e-206 724.2 1176 39.7
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.2e-201 708.0 1174 38.9
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.0e-201 707.2 1174 40.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.0e-200 704.9 1177 37.9
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 2.9e-200 703.4 1172 38.3
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 5.5e-199 699.1 1168 37.9
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 1.5e-196 691.0 1179 36.8
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.7e-195 687.6 1183 39.3
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.8e-194 684.1 1168 37.2
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 2.2e-192 677.2 1161 37.6
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.8e-192 676.4 1183 38.5
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 7.2e-191 672.2 1170 36.3
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 7.2e-191 672.2 1163 37.4
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.6e-190 671.0 1168 36.3
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 2.7e-190 670.2 1149 39.2
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 4.0e-189 666.4 1173 35.9
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 7.5e-188 662.1 1169 39.1
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.3e-187 661.4 1167 36.3
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 7.0e-186 655.6 1171 36.0
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 4.5e-185 652.9 1164 36.6
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 2.2e-184 650.6 1183 38.0
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 7.2e-183 645.6 1126 38.4
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.8e-181 641.0 965 41.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 5.2e-181 639.4 909 41.7
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 3.4e-180 636.7 1145 38.5
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 4.5e-177 626.3 1229 36.6
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.0e-176 625.2 1170 35.0
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 2.9e-176 623.6 1071 39.1
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 2.6e-172 610.5 1164 36.3
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 7.8e-161 572.4 1228 32.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.8e-157 561.2 662 47.4
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.2e-157 559.7 990 38.0
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 3.3e-151 540.4 869 39.0
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.5e-143 515.0 987 36.5
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 3.0e-128 464.2 1278 29.4
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 9.0e-125 452.6 1248 27.7
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.9e-114 418.3 886 33.2
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 2.4e-101 374.8 465 48.0
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.4e-96 359.0 810 34.2
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 7.2e-90 336.7 426 44.1
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.6e-87 328.2 237 72.2
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 4.4e-79 300.8 1285 24.7
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.6e-73 281.2 319 50.5
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.8e-72 278.9 319 50.2
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.2e-71 276.2 318 49.7
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.2e-70 271.9 1279 24.1
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 2.8e-70 271.6 322 48.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 5.3e-69 267.3 318 47.8
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-68 266.2 318 48.1
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 2.7e-65 255.0 293 49.8
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 4.8e-62 244.2 1142 25.1
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.4e-61 242.7 319 46.4
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 7.0e-61 240.4 1133 24.2
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 9.5e-58 229.9 417 38.1
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.6e-57 229.2 376 38.3
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.5e-55 222.6 338 40.8
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 9.8e-55 219.9 338 39.9
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 9.8e-55 219.9 235 49.4
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 2.1e-49 202.2 175 60.6
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.5e-47 196.1 993 24.4
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.5e-44 184.9 169 59.2
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 2.3e-43 182.2 190 49.5
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.1e-42 179.9 175 56.0
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 4.3e-42 177.9 175 53.1
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.4e-40 172.9 187 48.1
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.6e-39 168.7 167 55.7
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.4e-38 164.1 482 28.2
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 6.0e-28 131.0 248 31.9
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.0e-27 130.2 431 27.1
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.6e-25 122.9 305 31.5
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 2.1e-25 122.5 225 34.2
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 8.1e-25 120.6 309 33.0
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.4e-24 119.8 176 45.5
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.8e-24 119.4 441 28.3
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 1.8e-24 119.4 107 63.6
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.9e-22 111.3 261 29.5
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.4e-15 88.6 105 48.6
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.4e-15 88.6 103 49.5
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.3e-11 76.6 127 40.2
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 1.9e-10 72.8 49 65.3
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 4.3e-10 71.6 134 32.1
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 5.6e-10 71.2 45 68.9
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 9.6e-10 70.5 86 46.5
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 3.6e-09 68.6 81 45.7
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 6.2e-09 67.8 45 68.9
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 8.1e-09 67.4 66 57.6
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 6.9e-08 64.3 78 43.6
BcaB03g11656 Brassica carinata HOM05D004959 ORTHO05D005961 2.0e-07 62.8 111 37.8
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 5.8e-07 61.2 138 35.5


User provided reference genes

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