Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 3.1e-42 174.9 97 100.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 8.4e-24 113.6 96 74.0
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 1.1e-23 113.2 95 74.7
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 9.6e-20 100.1 96 62.5
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 6.2e-19 97.4 95 67.4
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 1.4e-18 96.3 96 60.4
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.4e-17 91.7 97 57.7
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 5.8e-17 90.9 98 59.2
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 7.6e-17 90.5 96 63.5
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 7.6e-17 90.5 96 62.5
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.0e-16 90.1 94 66.0
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 1.3e-16 89.7 97 61.9
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.2e-16 89.0 94 57.4
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.2e-16 89.0 98 61.2
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 3.8e-16 88.2 99 61.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 3.8e-16 88.2 95 62.1
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 6.5e-16 87.4 94 54.3
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 8.4e-16 87.0 95 56.8
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 8.4e-16 87.0 95 57.9
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.1e-15 86.7 101 57.4
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 1.9e-15 85.9 87 63.2
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.5e-15 85.5 94 56.4
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.2e-15 84.7 107 53.3
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 4.2e-15 84.7 107 53.3
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 4.2e-15 84.7 95 57.9
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 5.5e-15 84.3 94 55.3
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 5.5e-15 84.3 94 55.3
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 7.1e-15 84.0 95 57.9
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 9.3e-15 83.6 95 58.9
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 9.3e-15 83.6 95 57.9
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 9.3e-15 83.6 94 54.3
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 9.3e-15 83.6 98 58.2
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.2e-14 83.2 97 59.8
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.2e-14 83.2 93 53.8
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 1.2e-14 83.2 92 58.7
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.2e-14 83.2 94 58.5
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 1.2e-14 83.2 94 56.4
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 4.6e-14 81.3 95 55.8
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 6.0e-14 80.9 94 59.6
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 7.9e-14 80.5 94 56.4
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 7.9e-14 80.5 97 56.7
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.3e-13 79.7 94 55.3
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 1.3e-13 79.7 93 53.8
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.8e-13 79.3 97 55.7
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 2.3e-13 79.0 113 48.7
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 3.0e-13 78.6 95 54.7
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 3.9e-13 78.2 94 52.1
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.9e-13 78.2 96 54.2
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 5.1e-13 77.8 95 56.8
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 5.1e-13 77.8 98 56.1
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 8.7e-13 77.0 96 57.3
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 1.9e-12 75.9 97 54.6
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 3.3e-12 75.1 95 54.7
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.3e-12 75.1 93 54.8
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 3.3e-12 75.1 94 53.2
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 3.3e-12 75.1 94 54.3
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 4.3e-12 74.7 95 56.8
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 4.3e-12 74.7 96 55.2
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 7.4e-12 73.9 97 53.6
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 7.4e-12 73.9 90 53.3
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 7.4e-12 73.9 94 52.1
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 7.4e-12 73.9 94 55.3
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 1.3e-11 73.2 93 52.7
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.2e-11 72.4 52 73.1
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 2.2e-11 72.4 93 47.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 2.2e-11 72.4 94 47.9
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 2.8e-11 72.0 90 50.0
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 3.7e-11 71.6 95 55.8
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 3.7e-11 71.6 95 55.8
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 3.7e-11 71.6 95 51.6
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 3.7e-11 71.6 95 52.6
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 4.8e-11 71.2 94 48.9
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 6.3e-11 70.9 95 54.7
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 6.3e-11 70.9 94 47.9
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 6.3e-11 70.9 95 53.7
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 8.2e-11 70.5 95 53.7
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 1.8e-10 69.3 94 51.1
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.4e-10 68.9 94 51.1
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 3.1e-10 68.6 52 65.4
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 4.1e-10 68.2 96 51.0
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.3e-10 67.8 95 54.7
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.3e-10 67.8 95 53.7
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 6.9e-10 67.4 97 50.5
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 6.9e-10 67.4 97 50.5
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 6.9e-10 67.4 97 50.5
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 1.5e-09 66.2 94 53.2
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.5e-09 66.2 97 50.5
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.5e-09 66.2 97 50.5
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.5e-09 66.2 92 48.9
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.5e-09 66.2 97 56.7
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 2.6e-09 65.5 97 56.7
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 3.4e-09 65.1 92 48.9
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 3.4e-09 65.1 95 53.7
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 4.5e-09 64.7 103 44.7
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 5.9e-09 64.3 96 46.9
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 1.3e-08 63.2 94 48.9
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 1.7e-08 62.8 87 51.7
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 2.9e-08 62.0 93 50.5
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 5.0e-08 61.2 95 45.3
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 5.0e-08 61.2 95 47.4
Actinidia20387 Actinidia chinensis HOM05D007491 ORTHO05D009489 6.5e-08 60.8 95 56.8
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 4.2e-07 58.2 91 51.6
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 5.5e-07 57.8 76 44.7
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 5.5e-07 57.8 56 53.6
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 7.2e-07 57.4 73 46.6
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 7.2e-07 57.4 59 52.5
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 7.2e-07 57.4 68 50.0
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 9.3e-07 57.0 72 47.2
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.2e-06 56.6 55 54.5
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.6e-06 56.2 56 57.1
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 1.6e-06 56.2 94 45.7
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.6e-06 56.2 98 36.7
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.7e-06 55.5 79 44.3
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.6e-06 54.7 60 53.3
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.6e-06 54.7 60 53.3
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.6e-06 54.7 60 53.3
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 6.1e-06 54.3 58 51.7
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 6.1e-06 54.3 79 44.3
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 7.9e-06 53.9 55 54.5
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 7.9e-06 53.9 89 39.3


User provided reference genes

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