Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.2e-95 353.2 184 100.0
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.4e-72 275.8 214 71.0
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 8.7e-62 240.7 174 77.0
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.1e-51 207.2 211 58.8
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 2.9e-49 199.1 216 57.4
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 1.2e-47 193.7 215 53.5
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 1.8e-46 189.9 188 59.0
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 6.7e-46 188.0 201 52.7
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 8.7e-46 187.6 207 51.7
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 4.3e-45 185.3 208 52.9
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 7.4e-45 184.5 210 50.5
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 9.6e-45 184.1 210 51.4
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 1.3e-44 183.7 208 50.5
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 3.7e-44 182.2 207 50.7
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 3.7e-44 182.2 210 50.0
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 6.2e-44 181.4 210 50.0
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.1e-43 180.6 205 50.7
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 1.4e-43 180.3 211 51.2
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 1.4e-43 180.3 205 50.7
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 3.1e-43 179.1 201 51.2
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 4.0e-43 178.7 215 52.6
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 4.0e-43 178.7 200 51.5
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 5.3e-43 178.3 202 51.0
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 9.0e-43 177.6 206 51.5
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 1.2e-42 177.2 211 50.7
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 2.0e-42 176.4 201 51.2
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 2.0e-42 176.4 210 50.5
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 3.4e-42 175.6 207 50.7
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 3.4e-42 175.6 202 50.0
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 4.5e-42 175.3 213 53.1
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 4.5e-42 175.3 204 48.5
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 5.8e-42 174.9 210 50.0
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 7.6e-42 174.5 212 49.5
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 1.3e-41 173.7 204 48.5
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 2.2e-41 172.9 214 50.5
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 2.2e-41 172.9 199 54.8
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 2.2e-41 172.9 231 47.6
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 3.8e-41 172.2 201 50.7
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 4.9e-41 171.8 212 50.5
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 6.5e-41 171.4 211 50.7
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 6.5e-41 171.4 206 49.5
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 1.4e-40 170.2 212 48.1
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 1.9e-40 169.9 180 56.7
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 5.5e-40 168.3 231 45.5
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 5.5e-40 168.3 206 49.0
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 1.0e-38 164.1 223 46.6
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 1.8e-38 163.3 201 49.3
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 2.3e-38 162.9 230 46.5
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 3.9e-38 162.2 202 51.5
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 3.9e-38 162.2 206 50.5
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 5.1e-38 161.8 205 47.3
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 6.7e-38 161.4 201 50.2
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 1.9e-37 159.8 208 49.0
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 2.5e-37 159.5 209 47.8
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 4.3e-37 158.7 223 45.3
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 1.6e-36 156.8 212 47.6
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 2.1e-36 156.4 206 48.1
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 2.8e-36 156.0 229 44.5
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 4.8e-36 155.2 229 44.1
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 8.2e-36 154.5 211 47.4
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 1.1e-35 154.1 210 47.6
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 3.1e-35 152.5 203 47.3
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 2.6e-34 149.4 233 45.5
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 3.4e-34 149.1 211 46.4
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 7.6e-34 147.9 232 45.7
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 7.6e-34 147.9 205 44.9
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 1.3e-33 147.1 232 44.4
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 2.9e-33 146.0 212 43.9
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 2.9e-33 146.0 211 45.0
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 5.0e-33 145.2 205 45.4
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 6.5e-33 144.8 204 46.6
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 8.4e-33 144.4 201 44.8
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 8.4e-33 144.4 199 46.2
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 1.1e-32 144.1 211 44.1
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 1.1e-32 144.1 206 46.6
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 1.4e-32 143.7 204 46.1
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 2.5e-32 142.9 204 44.1
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 5.5e-32 141.7 202 45.0
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 5.5e-32 141.7 221 43.0
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 1.6e-31 140.2 201 42.3
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 1.6e-31 140.2 201 42.3
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 2.7e-31 139.4 203 43.8
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 2.7e-31 139.4 98 72.4
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 4.6e-31 138.7 201 42.3
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 4.6e-31 138.7 221 41.2
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 6.1e-31 138.3 213 41.3
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 3.9e-30 135.6 201 42.3
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 3.9e-30 135.6 201 42.3
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 3.9e-30 135.6 100 69.0
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 3.9e-30 135.6 202 44.6
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 8.7e-30 134.4 181 45.9
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 8.7e-30 134.4 181 45.9
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 1.1e-29 134.0 211 41.2
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 3.3e-29 132.5 209 43.1
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 2.2e-28 129.8 183 45.9
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 3.7e-28 129.0 190 43.7
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 6.3e-28 128.3 123 54.5
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.8e-27 126.7 159 52.8
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 9.0e-27 124.4 97 62.9
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 2.0e-26 123.2 200 40.5
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 5.9e-26 121.7 91 67.0
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 1.0e-25 120.9 203 41.4
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 1.0e-25 120.9 86 73.3
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 1.1e-24 117.5 82 68.3
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 3.2e-24 115.9 78 71.8
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.0e-21 106.7 199 38.2
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 3.3e-21 105.9 153 49.7
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 7.4e-21 104.8 219 34.7
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 8.2e-20 101.3 199 36.7
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 4.1e-19 99.0 210 35.7
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 1.2e-18 97.4 183 38.3
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 3.8e-17 92.4 207 35.3
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 1.4e-16 90.5 129 45.7
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 6.7e-14 81.6 122 42.6
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 8.2e-12 74.7 44 77.3
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.4e-11 73.9 41 87.8
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 2.2e-09 66.6 54 57.4
Rhsim01G0082000 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.5e-08 63.9 178 34.3
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 1.2e-07 60.8 112 34.8
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 1.2e-07 60.8 49 61.2
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 5.2e-06 55.5 141 34.8


User provided reference genes

Program Settings