Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.5e-49 198.0 100 100.0
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.1e-48 194.1 98 98.0
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 9.9e-44 179.9 95 95.8
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.1e-41 172.2 98 86.7
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.4e-26 120.9 70 90.0
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.8e-22 108.6 70 77.1
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 6.2e-22 107.5 70 81.4
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.8e-21 105.9 70 72.9
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 4.0e-21 104.8 70 74.3
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 6.9e-21 104.0 70 72.9
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 6.9e-21 104.0 70 74.3
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 6.9e-21 104.0 70 75.7
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 9.0e-21 103.6 70 77.1
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 9.0e-21 103.6 70 78.6
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 1.2e-20 103.2 70 72.9
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.5e-20 102.8 70 70.0
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 2.0e-20 102.4 70 74.3
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 2.0e-20 102.4 70 75.7
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 3.4e-20 101.7 70 71.4
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 3.4e-20 101.7 70 75.7
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 4.5e-20 101.3 70 71.4
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 4.5e-20 101.3 70 72.9
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 5.8e-20 100.9 70 75.7
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 5.8e-20 100.9 70 74.3
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 5.8e-20 100.9 70 75.7
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 5.8e-20 100.9 70 71.4
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 7.6e-20 100.5 70 72.9
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 9.9e-20 100.1 70 72.9
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 9.9e-20 100.1 70 71.4
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 9.9e-20 100.1 70 70.0
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 9.9e-20 100.1 70 70.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.3e-19 99.8 85 61.2
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 1.3e-19 99.8 70 72.9
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 1.7e-19 99.4 70 68.6
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 1.7e-19 99.4 70 71.4
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 2.9e-19 98.6 70 67.1
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 2.9e-19 98.6 70 71.4
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 3.8e-19 98.2 70 71.4
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 3.8e-19 98.2 70 71.4
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 3.8e-19 98.2 70 71.4
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 4.9e-19 97.8 70 70.0
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 8.4e-19 97.1 70 68.6
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 8.4e-19 97.1 70 70.0
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 1.1e-18 96.7 70 67.1
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.4e-18 96.3 70 70.0
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.9e-18 95.9 70 67.1
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.9e-18 95.9 70 67.1
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 1.9e-18 95.9 70 68.6
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.4e-18 95.5 70 68.6
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.4e-18 95.5 70 67.1
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.4e-18 95.5 70 67.1
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 3.2e-18 95.1 70 67.1
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 4.2e-18 94.7 70 68.6
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 4.2e-18 94.7 70 68.6
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 5.4e-18 94.4 70 64.3
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 5.4e-18 94.4 70 67.1
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 5.4e-18 94.4 70 67.1
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 5.4e-18 94.4 73 68.5
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 7.1e-18 94.0 70 65.7
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 1.2e-17 93.2 70 65.7
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.2e-17 93.2 70 67.1
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 1.2e-17 93.2 70 68.6
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.2e-17 93.2 70 65.7
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.6e-17 92.8 70 68.6
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 2.1e-17 92.4 70 62.9
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 2.1e-17 92.4 70 67.1
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 2.7e-17 92.0 70 62.9
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 3.5e-17 91.7 70 68.6
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 3.5e-17 91.7 70 67.1
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 3.5e-17 91.7 70 65.7
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 4.6e-17 91.3 70 65.7
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 4.6e-17 91.3 70 64.3
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 6.0e-17 90.9 70 62.9
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 6.0e-17 90.9 70 65.7
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 6.0e-17 90.9 70 61.4
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 6.0e-17 90.9 70 65.7
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 6.0e-17 90.9 70 65.7
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 6.0e-17 90.9 70 65.7
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 7.9e-17 90.5 70 65.7
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 7.9e-17 90.5 70 67.1
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 7.9e-17 90.5 70 62.9
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 1.0e-16 90.1 70 64.3
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.0e-16 90.1 70 62.9
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.0e-16 90.1 70 65.7
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.3e-16 89.7 70 64.3
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 1.3e-16 89.7 70 61.4
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 1.3e-16 89.7 70 64.3
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 1.8e-16 89.4 70 62.9
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.8e-16 89.4 70 67.1
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 2.3e-16 89.0 70 62.9
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.3e-16 89.0 70 68.6
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 2.3e-16 89.0 70 61.4
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 3.9e-16 88.2 70 62.9
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.1e-16 87.8 70 61.4
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 5.1e-16 87.8 70 65.7
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.1e-16 87.8 70 60.0
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 8.7e-16 87.0 70 60.0
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 1.1e-15 86.7 70 64.3
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 1.5e-15 86.3 70 61.4
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 1.5e-15 86.3 70 58.6
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 2.5e-15 85.5 89 49.4
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 2.5e-15 85.5 70 61.4
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 3.3e-15 85.1 70 62.9
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 5.6e-15 84.3 70 57.1
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 5.6e-15 84.3 70 58.6
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 5.6e-15 84.3 70 62.9
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.6e-15 84.3 70 58.6
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 7.4e-15 84.0 70 62.9
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 58.6
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 58.6
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 58.6
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 58.6
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 58.6
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 60.0
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 9.6e-15 83.6 70 60.0
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-14 83.2 70 60.0
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-14 83.2 70 60.0
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.3e-14 83.2 70 58.6
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 2.1e-14 82.4 70 58.6
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 2.8e-14 82.0 70 58.6
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 2.8e-14 82.0 73 56.2
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 2.8e-14 82.0 70 57.1
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 3.7e-14 81.6 70 55.7
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 3.7e-14 81.6 70 58.6
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 57.1
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 6.2e-14 80.9 70 60.0
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 8.1e-14 80.5 70 54.3
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 8.1e-14 80.5 70 55.7
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 8.1e-14 80.5 70 57.1
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.4e-13 79.7 70 57.1
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.4e-13 79.7 70 57.1
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 1.4e-13 79.7 70 54.3
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 4.0e-13 78.2 70 57.1
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 5.3e-13 77.8 70 58.6
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 6.9e-13 77.4 70 54.3
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 9.0e-13 77.0 73 52.1
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 1.2e-12 76.6 70 57.1
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.5e-12 76.3 70 52.9
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.3e-11 73.2 52 73.1
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.3e-11 73.2 73 49.3
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 1.7e-11 72.8 70 55.7
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.9e-11 72.0 70 50.0
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.9e-11 71.2 73 47.9
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 6.5e-11 70.9 73 47.9
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.1e-10 70.1 70 48.6
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 1.4e-10 69.7 70 54.3
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 2.7e-09 65.5 53 60.4
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.6e-09 64.7 70 45.7
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 1.3e-08 63.2 71 50.7
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.9e-08 61.6 43 74.4
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 5.1e-08 61.2 55 56.4
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 5.7e-07 57.8 43 62.8


User provided reference genes

Program Settings