Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0080400 Rhododendron simsii HOM05D008549 ORTHO05D023372 7.5e-111 404.4 306 100.0
RhsimUnG0068600 Rhododendron simsii HOM05D000029 ORTHO05D023372 5.0e-30 136.0 66 100.0
vmacro04617 Vaccinium macrocarpon HOM05D000029 ORTHO05D002500 5.0e-22 109.4 167 55.7
Rhsim07G0215100 Rhododendron simsii HOM05D000029 ORTHO05D002500 7.5e-18 95.5 101 81.2
CSS0038857 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002500 3.5e-15 86.7 77 75.3
CSS0040647 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002500 3.5e-15 86.7 77 75.3
Aqoxy5G01883_Aqoxy5G01884 Aquilegia oxysepala HOM05D000029 ORTHO05D002500 1.1e-13 81.6 98 71.4
Lalb_Chr11g0064731 Lupinus albus HOM05D000029 ORTHO05D002500 5.5e-13 79.3 104 70.2
Lalb_Chr08g0242781 Lupinus albus HOM05D000029 ORTHO05D002500 7.2e-13 79.0 104 69.2
CSS0017849 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002500 9.5e-13 78.6 72 80.6
MELO3C003487.2 Cucumis melo HOM05D000029 ORTHO05D002500 1.8e-11 74.3 46 71.7
Actinidia29643 Actinidia chinensis HOM05D000029 ORTHO05D002500 5.2e-11 72.8 46 73.9
ECA240G0636 Erigeron canadensis HOM05D000029 ORTHO05D002500 5.2e-11 72.8 65 53.8
Cfa020701 Carpinus fangiana HOM05D000029 ORTHO05D002500 6.8e-11 72.4 100 71.0
Cfa020703 Carpinus fangiana HOM05D000029 ORTHO05D002500 1.2e-10 71.6 99 69.7
Aa31LG4G15260 Aethionema arabicum HOM05D000029 ORTHO05D023372 2.0e-10 70.9 47 72.3
Phvul.009G114500 Phaseolus vulgaris HOM05D000029 ORTHO05D002500 2.6e-10 70.5 96 66.7
HPP92_018803 Vanilla planifolia HOM05D000029 ORTHO05D002500 3.4e-10 70.1 97 59.8
CANSAT25G3834 Cannabis sativa HOM05D000029 ORTHO05D002500 4.4e-10 69.7 45 71.1
Nitab4.5_0000377g0050 Nicotiana tabacum HOM05D000029 ORTHO05D002500 4.4e-10 69.7 44 70.5
Nitab4.5_0006982g0010 Nicotiana tabacum HOM05D000029 ORTHO05D002500 4.4e-10 69.7 44 70.5
CANSAT25G1126 Cannabis sativa HOM05D000029 ORTHO05D002500 5.7e-10 69.3 165 42.4
Thecc.08G193700 Theobroma cacao HOM05D000029 ORTHO05D002500 5.7e-10 69.3 102 69.6
TAR381G1696 Trochodendron aralioides HOM05D000029 ORTHO05D002500 1.3e-09 68.2 50 62.0
RcHm_v2.0_Chr7g0232471 Rosa chinensis HOM05D000029 ORTHO05D002500 1.7e-09 67.8 47 68.1
CsaV3_3G048320 Cucumis sativus L. HOM05D000029 ORTHO05D002500 2.2e-09 67.4 42 69.0
RcHm_v2.0_Chr7g0217331 Rosa chinensis HOM05D000029 ORTHO05D002500 2.2e-09 67.4 47 68.1
MD08G1210000 Malus domestica HOM05D000029 ORTHO05D002500 4.9e-09 66.2 46 67.4
PGR031G2221 Punica granatum HOM05D000029 ORTHO05D002500 6.3e-09 65.9 46 69.6
CAN.G1980.2 Capsicum annuum HOM05D000029 ORTHO05D002500 8.3e-09 65.5 43 69.8
Gohir.D02G086900 Gossypium hirsutum HOM05D000029 ORTHO05D002500 8.3e-09 65.5 44 70.5
Gorai.005G097600 Gossypium raimondii HOM05D000029 ORTHO05D002500 8.3e-09 65.5 44 70.5
QL12p040375 Quercus lobata HOM05D000029 ORTHO05D002500 8.3e-09 65.5 43 72.1
Gohir.D01G170300 Gossypium hirsutum HOM05D000029 ORTHO05D002500 1.1e-08 65.1 40 77.5
Gorai.002G211900 Gossypium raimondii HOM05D000029 ORTHO05D002500 1.1e-08 65.1 40 77.5
CSS0010345 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002500 1.8e-08 64.3 46 67.4
CSS0033403 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002500 1.8e-08 64.3 46 67.4
COL.COLO4_17834 Corchorus olitorius HOM05D000029 ORTHO05D002500 1.8e-08 64.3 45 64.4
Duzib116G0435 Durio zibethinus HOM05D000029 ORTHO05D002500 1.8e-08 64.3 46 67.4
Gohir.A02G079000 Gossypium hirsutum HOM05D000029 ORTHO05D002500 1.8e-08 64.3 44 70.5
Psat5g019120 Pisum sativum HOM05D000029 ORTHO05D002500 2.4e-08 63.9 49 59.2
Ciclev10014879m.g Citrus clementina HOM05D000029 ORTHO05D002500 3.2e-08 63.5 100 59.0
PSO447G0110 Papaver somniferum HOM05D000029 ORTHO05D002500 4.1e-08 63.2 90 67.8
Eucgr.F02181 Eucalyptus grandis HOM05D000029 ORTHO05D002500 7.0e-08 62.4 42 66.7
HanXRQChr10g0297631 Helianthus annuus HOM05D000029 ORTHO05D002500 7.0e-08 62.4 74 62.2
MELO3C018552.2 Cucumis melo HOM05D000029 ORTHO05D002500 1.2e-07 61.6 83 65.1
vmacro21380 Vaccinium macrocarpon HOM05D000029 ORTHO05D002500 1.2e-07 61.6 73 63.0
CiPaw.06G161700 Carya illinoinensis HOM05D000029 ORTHO05D002500 1.6e-07 61.2 159 44.7
Rhsim01G0079600 Rhododendron simsii HOM05D008549 ORTHO05D009599 1.6e-07 61.2 41 68.3
Ca_15552_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002500 2.0e-07 60.8 44 61.4
PSO210G5969 Papaver somniferum HOM05D000029 ORTHO05D002500 2.0e-07 60.8 84 65.5
ClCG11G014890 Citrullus lanatus HOM05D000029 ORTHO05D002500 2.7e-07 60.5 40 65.0
Gohir.A06G028800 Gossypium hirsutum HOM05D000029 ORTHO05D002500 2.7e-07 60.5 100 65.0
Actinidia19270 Actinidia chinensis HOM05D000029 ORTHO05D002500 3.5e-07 60.1 113 35.4
QL12p040471 Quercus lobata HOM05D000029 ORTHO05D002500 3.5e-07 60.1 44 68.2
SEGI_37993 Sequoiadendron giganteum HOM05D000029 ORTHO05D023372 3.5e-07 60.1 51 58.8
ClCG02G007400 Citrullus lanatus HOM05D000029 ORTHO05D002500 4.6e-07 59.7 83 65.1
Lj4A80T29 Lonicera japonica HOM05D000029 ORTHO05D002500 4.6e-07 59.7 142 39.4
PGR083G1018 Punica granatum HOM05D000029 ORTHO05D002500 4.6e-07 59.7 40 70.0
Medtr3g110860 Medicago truncatula HOM05D000029 ORTHO05D002500 7.8e-07 58.9 46 58.7
TWI56G0321 Tripterygium wilfordii HOM05D000029 ORTHO05D002500 1.0e-06 58.5 57 52.6
Duzib041G0350 Durio zibethinus HOM05D000029 ORTHO05D002500 1.3e-06 58.2 44 61.4
Prupe.1G542300 Prunus persica HOM05D000029 ORTHO05D002500 1.7e-06 57.8 43 67.4
Gorai.010G030600 Gossypium raimondii HOM05D000029 ORTHO05D002500 3.9e-06 56.6 97 63.9
QL08p008585 Quercus lobata HOM05D000053 ORTHO05D000035 3.9e-06 56.6 86 39.5
MD15G1394100 Malus domestica HOM05D000029 ORTHO05D002500 5.0e-06 56.2 112 34.8
A08p34250 Brassica napus HOM05D000029 ORTHO05D002500 6.6e-06 55.8 34 73.5
BraA08t35337Z Brassica rapa HOM05D000029 ORTHO05D002500 6.6e-06 55.8 34 73.5
HanXRQChr10g0297621 Helianthus annuus HOM05D000029 ORTHO05D002500 6.6e-06 55.8 43 62.8
Atru.chr5.2144 Acer truncatum HOM05D000029 ORTHO05D002500 8.6e-06 55.5 111 33.3
Duzib132G1037 Durio zibethinus HOM05D000029 ORTHO05D002500 8.6e-06 55.5 110 34.5
Gohir.D05G218300 Gossypium hirsutum HOM05D000029 ORTHO05D002500 8.6e-06 55.5 112 31.2
Gorai.009G225300 Gossypium raimondii HOM05D000029 ORTHO05D002500 8.6e-06 55.5 112 31.2
Nn1g05940 Nelumbo nucifera HOM05D000029 ORTHO05D002500 8.6e-06 55.5 43 60.5
Nn5g28014 Nelumbo nucifera HOM05D000029 ORTHO05D002500 8.6e-06 55.5 43 60.5


User provided reference genes

Program Settings