Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 8.2e-70 266.9 133 100.0
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 5.5e-18 94.7 92 52.2
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 5.5e-18 94.7 85 58.8
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 1.2e-17 93.6 88 59.1
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 2.8e-17 92.4 88 55.7
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 1.0e-16 90.5 89 55.1
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 3.0e-16 89.0 87 56.3
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 2.6e-15 85.9 89 57.3
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 2.6e-15 85.9 93 58.1
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 2.6e-15 85.9 87 52.9
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 2.8e-14 82.4 87 52.9
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 8.3e-14 80.9 96 56.2
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 8.3e-14 80.9 87 50.6
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 1.4e-13 80.1 87 48.3
Ciclev10010147m.g Citrus clementina HOM05D003010 ORTHO05D010439 1.8e-13 79.7 88 54.5
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.8e-13 79.7 87 49.4
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 2.4e-13 79.3 89 49.4
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.2e-12 77.0 88 48.9
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 1.2e-12 77.0 90 51.1
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 5.9e-12 74.7 88 45.5
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 5.9e-12 74.7 88 45.5
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.0e-11 73.9 95 45.3
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 1.0e-11 73.9 87 49.4
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.3e-11 73.6 95 45.3
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.7e-11 73.2 96 51.0
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.7e-11 73.2 96 51.0
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.7e-11 73.2 96 51.0
CsaV3_1G029730 Cucumis sativus L. HOM05D003010 ORTHO05D010439 1.7e-11 73.2 87 51.7
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.7e-11 73.2 95 45.3
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 2.3e-11 72.8 88 51.1
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 6.6e-11 71.2 91 46.2
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 6.6e-11 71.2 91 46.2
CSS0046948 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 8.6e-11 70.9 100 50.0
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.9e-10 69.7 90 46.7
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 2.5e-10 69.3 88 46.6
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 2.5e-10 69.3 92 43.5
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 2.5e-10 69.3 91 47.3
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 4.3e-10 68.6 90 46.7
Thecc.09G121000 Theobroma cacao HOM05D029830 ORTHO05D010439 4.3e-10 68.6 92 46.7
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 5.6e-10 68.2 100 41.0
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 5.6e-10 68.2 123 36.6
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 9.5e-10 67.4 100 39.0
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 1.6e-09 66.6 89 49.4
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.6e-09 66.6 98 41.8
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 2.1e-09 66.2 132 37.1
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 2.1e-09 66.2 87 43.7
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 2.1e-09 66.2 88 44.3
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.8e-09 65.9 93 44.1
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 2.8e-09 65.9 92 43.5
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 3.6e-09 65.5 97 43.3
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 3.6e-09 65.5 97 43.3
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 3.6e-09 65.5 87 43.7
COL.COLO4_35181 Corchorus olitorius HOM05D018231 ORTHO05D010439 4.7e-09 65.1 100 41.0
Eucgr.C01116 Eucalyptus grandis HOM05D009305 ORTHO05D010439 4.7e-09 65.1 88 46.6
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 4.7e-09 65.1 87 42.5
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.7e-09 65.1 89 44.9
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.7e-09 65.1 89 44.9
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 4.7e-09 65.1 131 35.1
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 4.7e-09 65.1 87 43.7
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 6.1e-09 64.7 87 42.5
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 8.0e-09 64.3 87 42.5
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 8.0e-09 64.3 88 43.2
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 8.0e-09 64.3 93 44.1
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 8.0e-09 64.3 93 41.9
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 8.0e-09 64.3 88 44.3
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 1.8e-08 63.2 88 44.3
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 1.8e-08 63.2 87 43.7
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 1.8e-08 63.2 87 43.7
Lj1A974G32 Lonicera japonica HOM05D003010 ORTHO05D003623 2.3e-08 62.8 91 42.9
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 3.1e-08 62.4 89 40.4
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 3.1e-08 62.4 88 45.5
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 3.1e-08 62.4 87 42.5
Glyma.17G117900 Glycine max HOM05D003010 ORTHO05D010439 4.0e-08 62.0 93 41.9
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 4.0e-08 62.0 89 41.6
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 6.8e-08 61.2 87 36.8
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 6.8e-08 61.2 87 42.5
Sed0015404 Sechium edule HOM05D009305 ORTHO05D010439 6.8e-08 61.2 89 47.2
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 8.9e-08 60.8 111 36.0
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 8.9e-08 60.8 87 37.9
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 8.9e-08 60.8 87 42.5
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 8.9e-08 60.8 89 41.6
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 1.2e-07 60.5 92 46.7
Sc18g0000820 Simmondsia chinensis HOM05D003010 ORTHO05D010439 1.2e-07 60.5 91 44.0
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.2e-07 60.5 92 40.2
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 1.2e-07 60.5 88 43.2
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 1.5e-07 60.1 91 41.8
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 1.5e-07 60.1 90 38.9
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 1.5e-07 60.1 92 44.6
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 1.5e-07 60.1 92 44.6
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 1.5e-07 60.1 87 41.4
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.5e-07 60.1 97 41.2
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 2.0e-07 59.7 87 40.2
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 2.0e-07 59.7 87 40.2
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.0e-07 59.7 111 37.8
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 2.0e-07 59.7 111 37.8
CDE04G1477 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 2.6e-07 59.3 93 37.6
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 4.4e-07 58.5 90 41.1
Lalb_Chr13g0302051 Lupinus albus HOM05D009305 ORTHO05D010439 4.4e-07 58.5 92 43.5
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 4.4e-07 58.5 105 39.0
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 5.8e-07 58.2 93 36.6
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 5.8e-07 58.2 88 39.8
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 5.8e-07 58.2 101 37.6
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 5.8e-07 58.2 94 40.4
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 5.8e-07 58.2 111 38.7
Cpa.g.sc13.241 Carica papaya HOM05D003010 ORTHO05D003623 7.5e-07 57.8 87 37.9
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 7.5e-07 57.8 103 38.8
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 7.5e-07 57.8 90 38.9
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 7.5e-07 57.8 87 41.4
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 9.8e-07 57.4 90 40.0
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 9.8e-07 57.4 113 37.2
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 9.8e-07 57.4 89 41.6
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 9.8e-07 57.4 89 41.6
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 9.8e-07 57.4 110 34.5
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 1.3e-06 57.0 88 38.6
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.3e-06 57.0 87 40.2
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.3e-06 57.0 93 35.5
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 1.7e-06 56.6 87 37.9
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 1.7e-06 56.6 93 38.7
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.7e-06 56.6 93 38.7
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.7e-06 56.6 93 38.7
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 1.7e-06 56.6 93 38.7
Lalb_Chr06g0169801 Lupinus albus HOM05D003010 ORTHO05D003623 1.7e-06 56.6 88 42.0
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 1.7e-06 56.6 88 39.8
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 1.7e-06 56.6 93 38.7
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 2.2e-06 56.2 60 46.7
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 2.2e-06 56.2 93 39.8
A02p05990 Brassica napus HOM05D009305 ORTHO05D010439 2.9e-06 55.8 96 39.6
BraA02t05551Z Brassica rapa HOM05D009305 ORTHO05D010439 2.9e-06 55.8 96 39.6
Phvul.003G161400 Phaseolus vulgaris HOM05D009305 ORTHO05D010439 2.9e-06 55.8 88 37.5
arahy.Tifrunner.gnm1.ann1.0EDZ2A Arachis hypogaea HOM05D009305 ORTHO05D010439 3.7e-06 55.5 97 36.1
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 3.7e-06 55.5 87 39.1
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 3.7e-06 55.5 54 53.7
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 4.9e-06 55.1 51 54.9
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 4.9e-06 55.1 91 41.8
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 4.9e-06 55.1 88 42.0
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 4.9e-06 55.1 54 51.9
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 4.9e-06 55.1 88 40.9
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 4.9e-06 55.1 93 39.8
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 6.4e-06 54.7 91 36.3
ECA234G2671 Erigeron canadensis HOM05D003010 ORTHO05D010439 8.3e-06 54.3 89 41.6


User provided reference genes

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