Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.7e-194 681.8 336 100.0
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.3e-169 599.0 336 88.1
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 8.8e-137 490.7 350 73.4
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.1e-131 473.8 345 71.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.6e-128 462.6 345 69.9
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.4e-126 456.1 327 70.9
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.8e-118 429.9 333 68.2
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.3e-108 396.4 336 60.4
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.5e-107 392.9 328 60.4
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.5e-107 392.9 336 61.0
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 4.2e-107 392.1 332 61.4
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 4.2e-107 392.1 336 61.9
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 1.8e-105 386.7 328 60.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 8.9e-105 384.4 333 60.4
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 8.9e-105 384.4 339 58.1
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-104 383.6 339 58.4
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-103 380.6 339 57.8
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 2.2e-103 379.8 335 60.0
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 2.8e-103 379.4 330 60.3
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 3.7e-103 379.0 326 58.3
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.1e-102 375.9 340 57.9
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 4.1e-102 375.6 326 59.8
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.0e-102 374.8 331 59.5
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 3.5e-101 372.5 267 70.4
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 4.5e-101 372.1 330 58.2
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.8e-101 371.3 331 59.5
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 7.8e-101 371.3 331 59.5
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.8e-98 362.8 333 55.3
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.7e-98 362.1 332 58.4
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 6.1e-98 361.7 333 57.1
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 8.0e-98 361.3 331 56.5
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.0e-97 360.9 318 58.8
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.8e-97 358.2 331 57.4
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 8.9e-97 357.8 327 56.6
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 1.2e-96 357.5 329 58.7
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.2e-96 357.5 334 56.0
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.2e-96 357.5 327 59.3
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.5e-96 357.1 322 60.6
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.5e-96 357.1 333 55.3
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.0e-96 356.7 341 56.3
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.9e-95 352.8 336 57.1
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.9e-95 352.8 331 55.0
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.9e-95 352.1 331 57.1
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.2e-94 349.4 324 57.7
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.5e-93 345.9 306 60.1
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.0e-92 344.4 333 53.8
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.3e-92 344.0 327 56.3
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.7e-92 343.6 329 55.0
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.3e-92 343.2 327 56.3
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 3.0e-92 342.8 327 56.0
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 6.6e-92 341.7 334 56.3
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.6e-92 341.3 327 55.7
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 1.1e-91 340.9 279 62.4
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 1.5e-91 340.5 334 53.0
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.9e-91 340.1 336 55.7
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.5e-91 339.7 327 53.5
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.3e-91 339.0 341 52.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.5e-91 337.8 336 55.7
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.5e-91 337.8 336 55.7
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 2.8e-90 336.3 318 56.3
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-90 336.3 350 53.4
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 4.7e-90 335.5 333 54.7
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.1e-89 334.3 301 58.5
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.4e-89 334.0 326 55.2
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.8e-89 333.6 329 55.0
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.3e-89 333.2 336 53.6
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.1e-89 332.8 328 54.6
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.0e-89 332.4 331 52.0
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 5.2e-89 332.0 331 55.9
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 8.9e-89 331.3 323 56.3
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.2e-88 330.9 329 53.2
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.2e-88 330.9 300 58.0
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.6e-88 329.7 336 53.3
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 4.4e-88 328.9 289 59.5
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.4e-88 328.9 337 53.1
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 9.8e-88 327.8 327 53.2
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 9.8e-88 327.8 328 51.8
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.7e-87 327.0 327 52.9
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 2.9e-87 326.2 336 52.1
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.9e-87 326.2 326 54.0
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 4.9e-87 325.5 325 53.5
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.9e-87 325.5 316 53.5
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 4.9e-87 325.5 332 52.7
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 8.3e-87 324.7 311 56.6
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 8.3e-87 324.7 334 51.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.1e-86 324.3 310 56.5
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 1.9e-86 323.6 331 52.9
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.2e-86 322.8 300 56.0
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.2e-86 322.8 256 64.1
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 4.1e-86 322.4 328 53.0
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 5.4e-86 322.0 326 52.5
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 5.4e-86 322.0 301 56.5
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.0e-86 321.6 329 53.2
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 7.0e-86 321.6 321 53.0
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 9.2e-86 321.2 328 52.1
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.2e-86 321.2 311 55.9
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.2e-85 320.9 328 52.7
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-85 320.9 328 53.4
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 2.1e-85 320.1 302 54.6
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.5e-85 319.3 331 50.8
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 4.6e-85 318.9 336 52.1
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.0e-85 318.5 341 52.5
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.0e-84 317.8 328 51.5
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.3e-84 317.4 326 50.9
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 5.1e-84 315.5 340 49.4
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 6.6e-84 315.1 298 55.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.1e-83 314.3 318 53.5
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.1e-83 314.3 331 50.2
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 1.1e-83 314.3 311 55.0
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.9e-83 313.5 332 52.4
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.3e-83 312.4 327 51.7
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 9.5e-83 311.2 321 51.1
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 9.5e-83 311.2 340 49.7
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 1.2e-82 310.8 280 57.9
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.6e-82 310.5 302 54.3
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 2.8e-82 309.7 302 54.3
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 4.7e-82 308.9 339 49.0
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 6.2e-82 308.5 263 60.1
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-81 307.8 290 56.9
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.8e-81 307.0 307 52.4
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.8e-81 307.0 250 61.6
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 2.3e-81 306.6 301 52.5
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 3.1e-81 306.2 309 52.1
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 8.9e-81 304.7 311 52.4
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.2e-80 304.3 307 51.1
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.0e-80 303.5 268 57.1
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.6e-80 303.1 306 52.0
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.6e-80 303.1 306 52.0
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.6e-80 303.1 311 50.8
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 4.4e-80 302.4 306 52.0
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 1.3e-79 300.8 306 52.0
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.3e-79 300.8 323 52.6
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 2.9e-79 299.7 295 55.6
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 2.9e-79 299.7 295 55.6
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 8.3e-79 298.1 311 50.5
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.4e-78 297.4 342 47.4
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 5.4e-78 295.4 291 54.3
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 3.5e-77 292.7 310 50.6
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 2.3e-76 290.0 318 48.4
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 3.6e-74 282.7 313 48.9
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 4.0e-73 279.3 248 58.1
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 8.9e-73 278.1 286 53.8
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.2e-72 277.7 361 44.9
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.7e-69 266.5 289 50.5
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.7e-69 266.5 267 53.2
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 4.3e-67 259.2 252 54.8
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 7.3e-67 258.5 254 51.2
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 8.1e-66 255.0 316 44.0
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.1e-65 254.6 290 46.6
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 5.3e-65 252.3 267 52.4
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 9.3e-62 241.5 237 53.6
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 3.5e-61 239.6 240 52.5
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.6e-60 235.3 244 50.4
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.8e-57 227.3 161 67.7
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 3.2e-54 216.5 157 66.2
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 4.6e-53 212.6 179 55.9
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 4.9e-47 192.6 235 46.0
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.1e-45 187.2 241 44.0
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.1e-45 187.2 156 61.5
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.7e-44 182.2 154 58.4
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.6e-43 178.3 218 44.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.1e-41 174.9 224 42.9
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 2.4e-41 173.7 279 44.1
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.5e-40 171.0 243 43.2
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 7.1e-38 162.2 178 48.3
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 2.1e-37 160.6 251 37.8
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 7.9e-29 132.1 89 71.9
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.0e-28 131.7 126 58.7
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 3.3e-27 126.7 91 72.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.8e-26 123.6 78 76.9
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.9e-22 110.9 117 47.9
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 7.2e-22 109.0 80 65.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 4.8e-18 96.3 80 60.0
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 3.1e-17 93.6 83 57.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.1e-09 68.6 62 53.2


User provided reference genes

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