Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-193 679.5 334 100.0
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.3e-169 599.7 336 88.1
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.3e-143 513.5 348 76.1
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.1e-137 491.5 343 72.6
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.4e-134 482.6 343 70.6
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.7e-132 476.5 333 71.8
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 3.0e-121 439.1 331 67.7
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.4e-113 413.7 334 61.1
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.8e-113 413.3 333 62.2
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 1.3e-111 407.1 327 62.4
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 2.2e-111 406.4 326 60.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 2.2e-111 406.4 334 62.9
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.8e-111 406.0 326 61.3
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 3.1e-110 402.5 323 61.0
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.0e-108 397.5 337 58.8
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.3e-108 397.1 331 61.0
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 5.0e-108 395.2 337 58.8
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.5e-108 394.4 337 58.8
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.1e-107 394.0 328 60.1
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.5e-107 393.7 329 60.8
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.2e-106 390.6 338 58.9
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 2.7e-106 389.4 328 58.2
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.0e-105 387.5 324 58.6
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.7e-103 380.2 330 59.7
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.2e-103 379.8 329 59.0
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.8e-103 379.4 331 58.0
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.4e-102 377.1 329 58.1
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.4e-102 377.1 331 57.4
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.4e-102 376.3 329 59.0
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.4e-102 376.3 329 59.0
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.1e-102 375.9 329 55.3
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 7.0e-102 374.8 330 57.0
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 9.1e-102 374.4 320 60.0
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 1.6e-101 373.6 329 56.8
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 5.9e-101 371.7 263 70.7
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.1e-99 367.5 341 55.7
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 1.1e-99 367.5 325 58.8
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 1.5e-99 367.1 325 58.5
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.5e-99 366.3 329 56.8
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 4.2e-99 365.5 326 58.0
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.5e-99 365.2 327 58.7
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.5e-99 365.2 317 59.6
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 7.2e-99 364.8 336 55.1
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.7e-98 362.8 338 54.7
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.4e-97 360.5 321 58.3
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.0e-97 359.4 332 56.6
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 5.2e-97 358.6 330 53.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-96 357.1 325 55.7
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-96 356.7 325 55.4
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.0e-96 356.7 317 57.7
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.4e-96 355.5 326 58.3
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.7e-95 353.6 325 54.8
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.7e-95 353.6 327 53.2
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 4.8e-95 352.1 334 53.9
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.8e-95 352.1 325 54.5
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 6.3e-95 351.7 330 55.8
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 6.3e-95 351.7 324 55.2
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 1.8e-94 350.1 324 56.8
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 4.1e-94 349.0 327 54.4
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 4.1e-94 349.0 283 62.2
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 7.0e-94 348.2 328 55.5
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.6e-93 347.1 328 56.7
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-93 346.7 348 52.0
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 5.9e-93 345.1 329 54.4
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.9e-93 345.1 337 55.8
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 7.7e-93 344.7 334 52.4
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 7.7e-93 344.7 327 56.9
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 7.7e-93 344.7 318 56.9
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 7.7e-93 344.7 326 52.8
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 1.3e-92 344.0 331 56.2
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.7e-92 343.6 328 56.1
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-92 343.6 327 56.3
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-92 343.6 327 57.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 5.0e-92 342.0 325 53.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 6.5e-92 341.7 332 52.4
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.5e-92 341.3 334 52.1
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.5e-92 341.3 327 56.0
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.1e-91 340.9 327 53.5
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.1e-91 340.9 329 52.6
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-91 340.5 326 56.1
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.5e-91 340.5 327 54.4
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.5e-91 340.5 251 66.9
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 1.9e-91 340.1 330 52.7
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 2.5e-91 339.7 338 54.1
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.2e-91 339.3 321 54.5
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.2e-91 339.0 321 53.3
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 9.4e-91 337.8 280 61.8
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 6.1e-90 335.1 324 52.5
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 1.4e-89 334.0 334 50.3
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.8e-89 333.6 327 51.7
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 3.0e-89 332.8 330 52.7
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 4.0e-89 332.4 329 55.3
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 5.2e-89 332.0 318 53.1
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.2e-88 330.9 327 54.4
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 1.2e-88 330.9 314 56.1
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 3.4e-88 329.3 331 54.7
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 9.8e-88 327.8 315 54.9
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 9.8e-88 327.8 328 52.4
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 9.8e-88 327.8 333 51.1
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 9.8e-88 327.8 296 57.4
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.7e-87 327.0 342 53.2
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 2.8e-87 326.2 313 53.4
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 2.8e-87 326.2 327 52.9
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 3.7e-87 325.9 329 50.8
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-86 324.3 328 52.1
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.1e-86 324.3 335 51.3
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.4e-86 323.2 326 53.1
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 5.4e-86 322.0 325 52.6
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 9.2e-86 321.2 307 52.4
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 9.2e-86 321.2 276 59.1
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 9.2e-86 321.2 331 51.7
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 9.2e-86 321.2 331 51.4
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.2e-85 320.9 338 48.2
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.0e-85 320.1 332 51.8
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 2.0e-85 320.1 280 58.6
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 3.5e-85 319.3 319 52.0
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 4.5e-85 318.9 307 51.8
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 5.9e-85 318.5 307 52.4
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 5.9e-85 318.5 250 62.8
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 7.7e-85 318.2 286 57.7
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 1.0e-84 317.8 328 52.7
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.3e-84 317.4 263 60.5
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.7e-84 317.0 307 52.4
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 1.7e-84 317.0 281 56.9
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 5.0e-84 315.5 296 54.7
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.9e-83 313.5 320 50.3
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.5e-83 313.2 264 59.8
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 5.6e-83 312.0 303 52.8
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 9.5e-83 311.2 303 52.5
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 9.5e-83 311.2 303 52.5
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.6e-82 310.5 318 51.9
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.8e-82 309.7 263 58.6
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 3.6e-82 309.3 303 52.5
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 4.7e-82 308.9 291 56.4
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 8.0e-82 308.1 327 49.2
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 8.9e-81 304.7 303 51.8
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 4.4e-80 302.4 286 56.6
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 4.4e-80 302.4 286 56.6
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 3.2e-78 296.2 359 46.2
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 1.2e-77 294.3 320 48.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 2.0e-77 293.5 247 60.3
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 2.3e-76 290.0 310 50.0
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 6.6e-76 288.5 284 54.2
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.4e-72 276.2 289 50.2
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 4.4e-72 275.8 249 56.6
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 8.3e-71 271.6 325 45.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 4.1e-70 269.2 265 53.6
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.1e-70 269.2 254 52.0
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.0e-68 263.1 314 45.2
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 1.9e-67 260.4 289 47.8
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 8.9e-65 251.5 242 55.0
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 3.7e-63 246.1 238 52.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 3.7e-63 246.1 242 51.2
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.5e-61 239.6 160 70.0
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 2.8e-58 229.9 155 70.3
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.7e-55 220.7 179 57.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 2.3e-52 210.3 233 49.8
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.9e-49 198.7 154 64.3
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.9e-48 194.9 241 45.2
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.9e-47 193.4 153 60.1
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 4.6e-45 186.0 219 44.3
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.7e-44 184.1 277 42.6
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.8e-41 174.1 224 45.1
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 9.0e-41 171.8 224 45.1
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.5e-40 171.0 250 40.0
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.6e-37 159.5 180 47.8
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 6.4e-31 139.0 88 73.9
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 4.6e-29 132.9 107 64.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-25 121.7 78 71.8
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.8e-25 120.9 91 68.1
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 2.2e-23 114.0 116 49.1
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 5.5e-22 109.4 80 65.0
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.9e-19 100.9 83 61.4
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 1.1e-17 95.1 80 56.2
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.9e-11 74.3 56 62.5


User provided reference genes

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