Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.0e-154 550.1 275 100.0
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 6.1e-128 461.1 275 84.4
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.3e-126 455.3 274 83.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.3e-125 453.4 249 90.8
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.9e-121 439.5 272 80.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 9.4e-121 437.2 273 79.1
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 6.8e-119 431.0 273 79.1
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.0e-118 429.5 272 80.1
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 8.3e-117 424.1 281 76.5
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.4e-116 423.3 247 83.8
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.8e-116 422.9 281 75.8
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.4e-116 422.5 275 78.2
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 2.4e-116 422.5 281 76.2
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.1e-116 422.2 248 83.5
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 5.4e-116 421.4 274 78.1
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.6e-115 419.9 263 78.7
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 7.7e-115 417.5 281 74.7
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 7.7e-115 417.5 245 84.5
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.3e-114 416.8 268 77.6
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.9e-114 415.6 263 77.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 3.8e-114 415.2 248 81.5
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.5e-113 413.3 277 75.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.9e-113 412.9 250 81.2
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.5e-113 412.5 248 80.6
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 3.2e-113 412.1 271 76.8
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 4.2e-113 411.8 271 76.8
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 5.5e-113 411.4 273 75.8
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 7.2e-113 411.0 248 80.6
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 9.4e-113 410.6 250 80.8
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 6.1e-112 407.9 271 73.1
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.8e-111 406.4 248 81.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-111 406.4 248 80.6
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-111 406.0 248 80.2
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 3.0e-111 405.6 247 80.2
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 8.8e-111 404.1 249 78.3
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.8e-111 404.1 248 80.6
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 8.8e-111 404.1 249 78.7
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 1.5e-110 403.3 237 84.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 3.4e-110 402.1 242 82.2
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 4.4e-110 401.7 272 73.5
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 4.4e-110 401.7 255 76.9
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.3e-109 400.2 281 73.3
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.7e-109 399.8 261 74.7
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.7e-109 399.8 246 79.3
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.7e-109 399.8 247 78.9
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.2e-109 399.4 271 74.2
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.7e-109 398.7 272 75.0
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 8.3e-109 397.5 275 72.7
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.1e-108 397.1 288 70.5
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 1.1e-108 397.1 280 74.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.8e-108 396.4 256 77.0
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 3.1e-108 395.6 273 74.7
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 3.1e-108 395.6 249 77.1
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.0e-106 390.6 248 76.6
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.0e-106 390.6 248 76.6
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.0e-106 390.6 248 76.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.7e-106 389.8 277 71.5
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.3e-106 389.4 284 70.1
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.8e-106 388.7 248 76.2
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.8e-106 388.7 248 76.2
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 8.6e-106 387.5 275 72.0
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 8.6e-106 387.5 275 72.0
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.5e-105 386.7 248 75.0
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 3.3e-105 385.6 294 68.0
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 5.5e-105 384.8 246 75.2
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-104 382.5 245 78.0
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 8.9e-103 377.5 263 71.9
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 1.5e-102 376.7 245 75.1
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.5e-102 376.7 249 73.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 8.3e-101 370.9 247 72.5
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.1e-100 370.5 247 74.1
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.1e-100 370.5 273 70.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 2.4e-100 369.4 270 69.6
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 3.2e-100 369.0 249 73.1
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 4.1e-100 368.6 269 68.8
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 9.2e-100 367.5 255 71.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.6e-99 366.7 275 67.3
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.0e-99 366.3 293 67.2
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.6e-99 365.2 269 69.5
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.0e-98 364.0 275 68.7
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.9e-98 362.1 273 68.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.9e-97 359.8 271 67.5
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.6e-96 356.7 246 73.6
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.8e-96 355.9 241 71.8
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 3.6e-96 355.5 304 64.8
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.1e-96 354.8 273 66.7
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.3e-95 352.8 304 65.1
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 5.4e-92 341.7 206 81.6
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.6e-91 338.6 209 78.9
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 8.6e-90 334.3 270 64.4
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.3e-85 320.5 274 62.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.7e-85 320.1 268 62.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 6.4e-85 318.2 248 66.5
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 7.1e-84 314.7 281 61.2
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.5e-81 306.2 344 56.1
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.8e-79 300.1 275 60.0
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.3e-79 299.7 273 58.6
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 4.0e-79 298.9 166 84.3
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 1.5e-78 297.0 253 60.9
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 4.4e-78 295.4 275 58.9
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.7e-77 293.5 166 82.5
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 2.2e-77 293.1 239 63.6
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 4.6e-75 285.4 267 59.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 3.0e-74 282.7 252 60.7
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 3.9e-74 282.3 273 56.4
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.7e-72 275.4 168 79.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 5.2e-71 271.9 273 52.4
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.4e-70 268.9 274 55.5
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 3.5e-67 259.2 244 57.4
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-66 256.9 158 77.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.1e-59 233.4 171 69.6
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 3.3e-57 226.1 294 46.6
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.9e-53 212.2 239 49.8
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.0e-50 204.5 253 46.2
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 5.3e-47 192.2 221 48.0
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.5e-41 173.3 128 68.8
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.8e-40 169.9 248 40.7
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.8e-40 169.1 110 75.5
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 3.8e-37 159.5 152 57.2
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-32 144.1 88 79.5
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-28 129.8 94 67.0
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.2e-28 128.6 76 80.3
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-25 121.3 131 52.7
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.8e-21 106.3 84 60.7
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 7.9e-19 98.6 186 34.9
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.4e-17 92.8 83 59.0
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 7.7e-14 82.0 74 62.2
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 3.2e-12 76.6 69 55.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 4.2e-12 76.3 38 89.5
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 8.8e-10 68.6 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 8.8e-10 68.6 37 83.8
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 4.4e-09 66.2 66 50.0
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 7.0e-07 58.9 42 66.7
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 9.1e-07 58.5 57 56.1
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 2.0e-06 57.4 57 50.9


User provided reference genes

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