Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 5.3e-61 237.7 133 100.0
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.7e-49 198.7 113 100.0
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 8.8e-48 193.7 133 81.2
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.2e-38 162.5 134 61.9
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.4e-37 159.1 133 59.4
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 4.7e-33 144.8 133 65.4
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 6.1e-33 144.4 133 61.7
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 6.1e-33 144.4 131 53.4
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 2.3e-32 142.5 137 52.6
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 8.8e-32 140.6 134 56.7
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 2.0e-31 139.4 134 56.0
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 3.4e-31 138.7 133 61.7
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 3.4e-31 138.7 133 51.9
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 5.7e-31 137.9 133 60.9
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 1.7e-30 136.3 133 51.9
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 1.7e-30 136.3 133 60.2
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 2.2e-30 136.0 145 49.7
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.8e-30 135.6 133 61.7
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 3.7e-30 135.2 134 52.2
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 2.4e-29 132.5 135 56.3
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 4.1e-29 131.7 133 48.9
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 7.0e-29 131.0 133 48.9
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.0e-29 131.0 133 50.4
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.0e-29 131.0 133 49.6
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 7.0e-29 131.0 133 49.6
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 9.1e-29 130.6 133 52.6
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 9.1e-29 130.6 131 49.6
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.6e-28 129.8 135 51.1
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 1.6e-28 129.8 135 63.7
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 2.0e-28 129.4 134 47.0
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 2.7e-28 129.0 135 63.0
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 7.7e-28 127.5 135 58.5
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.0e-27 127.1 133 55.6
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 1.3e-27 126.7 133 48.1
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 6.5e-27 124.4 133 49.6
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 6.5e-27 124.4 133 61.7
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 6.5e-27 124.4 134 49.3
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 8.5e-27 124.0 129 60.5
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.1e-26 123.6 135 60.0
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 2.5e-26 122.5 133 47.4
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.5e-26 122.5 133 57.9
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.2e-26 122.1 138 47.8
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.2e-26 121.7 136 58.8
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 5.5e-26 121.3 136 58.8
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 5.5e-26 121.3 133 52.6
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.4e-26 120.6 133 48.1
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 1.2e-25 120.2 135 46.7
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-25 120.2 133 47.4
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 1.6e-25 119.8 133 45.9
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.7e-25 119.0 131 48.1
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 2.7e-25 119.0 133 58.6
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.7e-25 119.0 134 52.2
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.7e-25 119.0 133 57.1
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.7e-25 119.0 82 85.4
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 3.6e-25 118.6 131 58.0
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 3.6e-25 118.6 135 57.8
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 4.7e-25 118.2 133 53.4
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 6.1e-25 117.9 131 57.3
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.1e-25 117.9 131 57.3
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.0e-24 117.1 131 57.3
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 1.0e-24 117.1 133 48.1
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 1.4e-24 116.7 143 45.5
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 3.0e-24 115.5 134 47.0
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 3.0e-24 115.5 138 50.7
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 5.2e-24 114.8 131 53.4
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 1.5e-23 113.2 135 59.3
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.5e-23 113.2 133 48.9
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 2.6e-23 112.5 133 52.6
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.4e-23 112.1 106 59.4
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 3.4e-23 112.1 106 59.4
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 4.4e-23 111.7 133 45.9
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 4.4e-23 111.7 134 49.3
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 9.8e-23 110.5 136 44.9
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 2.8e-22 109.0 133 43.6
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 2.8e-22 109.0 131 45.8
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 3.7e-22 108.6 136 46.3
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 6.3e-22 107.8 134 46.3
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.4e-21 106.7 110 62.7
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 1.8e-21 106.3 133 54.9
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 2.4e-21 105.9 133 54.9
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 5.4e-21 104.8 112 45.5
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 5.4e-21 104.8 135 55.6
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 5.4e-21 104.8 105 47.6
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.2e-20 103.6 112 47.3
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 2.7e-20 102.4 136 40.4
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 2.7e-20 102.4 133 54.1
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 4.5e-20 101.7 133 42.1
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 4.5e-20 101.7 131 52.7
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 7.7e-20 100.9 82 56.1
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 7.7e-20 100.9 144 41.7
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.0e-19 100.5 133 41.4
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 1.7e-19 99.8 133 52.6
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 3.8e-19 98.6 137 42.3
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 5.0e-19 98.2 131 40.5
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 1.1e-18 97.1 135 40.7
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 1.5e-18 96.7 134 53.0
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 2.5e-18 95.9 133 40.6
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 3.3e-18 95.5 138 42.0
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 5.5e-18 94.7 136 52.2
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 7.2e-18 94.4 97 53.6
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 9.5e-18 94.0 140 51.4
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 9.5e-18 94.0 140 51.4
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 9.5e-18 94.0 86 72.1
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.2e-17 93.6 137 51.1
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 2.8e-17 92.4 131 49.6
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 3.6e-17 92.0 133 55.6
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 6.1e-17 91.3 133 51.1
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 6.1e-17 91.3 132 50.0
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.1e-17 91.3 132 50.0
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.1e-17 91.3 132 50.0
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 8.0e-17 90.9 92 64.1
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 8.0e-17 90.9 151 39.1
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.0e-16 90.5 130 53.1
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.0e-16 90.5 151 37.7
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.4e-16 90.1 133 39.1
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 2.3e-16 89.4 132 48.5
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 3.0e-16 89.0 133 48.9
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.0e-16 89.0 137 41.6
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 4.0e-16 88.6 91 50.5
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 4.0e-16 88.6 90 51.1
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 6.8e-16 87.8 133 39.1
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 8.9e-16 87.4 130 50.0
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 8.9e-16 87.4 133 48.1
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 8.9e-16 87.4 90 44.4
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 2.0e-15 86.3 91 64.8
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 2.0e-15 86.3 91 64.8
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 2.0e-15 86.3 141 39.7
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 4.4e-15 85.1 96 51.0
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 4.4e-15 85.1 132 46.2
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 4.4e-15 85.1 80 52.5
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 5.7e-15 84.7 89 48.3
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 5.7e-15 84.7 127 50.4
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 7.5e-15 84.3 137 48.9
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.3e-14 83.6 91 63.7
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 2.2e-14 82.8 140 50.0
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.2e-14 82.8 135 42.2
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 2.2e-14 82.8 138 49.3
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 2.2e-14 82.8 89 66.3
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 2.8e-14 82.4 144 48.6
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 2.8e-14 82.4 107 38.3
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 3.7e-14 82.0 139 45.3
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 3.7e-14 82.0 72 61.1
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 3.7e-14 82.0 82 69.5
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 4.9e-14 81.6 92 63.0
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 6.3e-14 81.3 145 46.9
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.3e-14 81.3 92 46.7
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 6.3e-14 81.3 91 48.4
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 8.3e-14 80.9 92 60.9
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.1e-13 80.5 109 53.2
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.4e-13 80.1 105 40.0
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 1.8e-13 79.7 140 49.3
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 1.8e-13 79.7 140 49.3
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 3.2e-13 79.0 91 57.1
CSS0047823 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D033941 4.1e-13 78.6 55 63.6
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 5.4e-13 78.2 92 59.8
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 7.0e-13 77.8 141 38.3
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 9.2e-13 77.4 92 44.6
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 1.2e-12 77.0 136 47.1
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.6e-12 76.6 80 48.8
CSS0024061 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D033941 2.0e-12 76.3 55 61.8
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 2.7e-12 75.9 139 38.1
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.5e-12 75.5 105 41.0
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 4.5e-12 75.1 103 37.9
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 5.9e-12 74.7 82 47.6
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 7.8e-12 74.3 129 34.9
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.0e-11 73.9 89 60.7
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.3e-11 73.6 85 51.8
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 1.3e-11 73.6 91 58.2
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 2.3e-11 72.8 108 40.7
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 3.9e-11 72.0 91 60.4
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 6.6e-11 71.2 67 49.3
Dinv36526 Davidia involucrata HOM05D003537 ORTHO05D033941 8.6e-11 70.9 53 66.0
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 8.6e-11 70.9 59 59.3
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 3.3e-10 68.9 91 44.0
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 9.5e-10 67.4 93 41.9
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.6e-09 66.6 66 53.0
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.6e-09 66.6 59 52.5
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 6.1e-09 64.7 57 50.9
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 8.0e-09 64.3 83 41.0
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 5.8e-07 58.2 69 43.5
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.9e-06 55.8 31 71.0
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.9e-06 55.8 31 71.0
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.9e-06 55.1 59 49.2


User provided reference genes

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