Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0050200 Rhododendron simsii HOM05D001603 ORTHO05D001393 7.4e-24 114.0 112 100.0
Rhsim01G0055200 Rhododendron simsii HOM05D001603 ORTHO05D001393 4.1e-22 108.2 45 100.0
vmacro07747 Vaccinium macrocarpon HOM05D001603 ORTHO05D001393 6.1e-18 94.4 45 82.2
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 7.2e-11 70.9 42 59.5
Peaxi162Scf01694g00006 Petunia axillaris HOM05D001603 ORTHO05D001393 9.4e-11 70.5 40 62.5
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 1.2e-10 70.1 42 59.5
Lj7A438G59 Lonicera japonica HOM05D001603 ORTHO05D001393 4.7e-10 68.2 36 69.4
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 6.1e-10 67.8 42 57.1
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 1.0e-09 67.0 35 68.6
BcaB01g04253 Brassica carinata HOM05D001603 ORTHO05D001393 1.0e-09 67.0 38 63.2
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 1.4e-09 66.6 35 68.6
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 1.4e-09 66.6 35 71.4
Atru.chr11.1514 Acer truncatum HOM05D001603 ORTHO05D001393 1.8e-09 66.2 35 68.6
Aqoxy6G02756 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 2.3e-09 65.9 35 62.9
C04p54650 Brassica napus HOM05D001603 ORTHO05D001393 2.3e-09 65.9 35 65.7
Atru.chr7.2004 Acer truncatum HOM05D001603 ORTHO05D001393 3.0e-09 65.5 39 59.0
RcHm_v2.0_Chr2g0087141 Rosa chinensis HOM05D001603 ORTHO05D001393 3.0e-09 65.5 36 63.9
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.0e-09 65.1 38 60.5
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 4.0e-09 65.1 37 62.2
BcaC02g08401 Brassica carinata HOM05D001603 ORTHO05D001393 5.2e-09 64.7 35 65.7
BolC4t27011H Brassica oleracea HOM05D001603 ORTHO05D001393 5.2e-09 64.7 35 65.7
CARHR154350 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.2e-09 64.7 38 63.2
Aqoxy6G02757 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 6.8e-09 64.3 35 62.9
Aqoxy6G02760 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 6.8e-09 64.3 35 62.9
BcaC02g08400 Brassica carinata HOM05D001603 ORTHO05D001393 8.8e-09 63.9 35 62.9
BcaC02g08403 Brassica carinata HOM05D001603 ORTHO05D001393 8.8e-09 63.9 35 62.9
BcaC02g08405 Brassica carinata HOM05D001603 ORTHO05D001393 8.8e-09 63.9 35 62.9
BcaC02g08407 Brassica carinata HOM05D001603 ORTHO05D001393 8.8e-09 63.9 35 62.9
BolC4t27006H Brassica oleracea HOM05D001603 ORTHO05D001393 8.8e-09 63.9 35 62.9
BolC4t27013H Brassica oleracea HOM05D001603 ORTHO05D001393 8.8e-09 63.9 35 62.9
BcaC01g06264 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-08 63.5 38 57.9
A03p15020 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-08 63.5 38 57.9
C03p17510 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-08 63.5 38 57.9
C04p54670 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-08 63.5 35 62.9
BolC3t14164H Brassica oleracea HOM05D001603 ORTHO05D001393 1.2e-08 63.5 38 57.9
BolC4t27003H Brassica oleracea HOM05D001603 ORTHO05D001393 1.2e-08 63.5 35 62.9
BraA03t10796Z Brassica rapa HOM05D001603 ORTHO05D001393 1.2e-08 63.5 38 57.9
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 1.2e-08 63.5 38 55.3
FAN06G4924 Fragaria x ananassa HOM05D001603 ORTHO05D001393 1.5e-08 63.2 35 62.9
Carub.0008s1421 Capsella rubella HOM05D001603 ORTHO05D001393 2.0e-08 62.8 39 56.4
FAN26G1312 Fragaria x ananassa HOM05D001603 ORTHO05D001393 2.6e-08 62.4 32 71.9
CARHR267050 Cardamine hirsuta HOM05D001603 ORTHO05D001393 4.4e-08 61.6 38 57.9
C04p54690 Brassica napus HOM05D001603 ORTHO05D001393 7.5e-08 60.8 35 60.0
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 7.5e-08 60.8 35 60.0
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 7.5e-08 60.8 37 56.8
AL5G28100 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 9.8e-08 60.5 34 61.8
Duzib187G1932 Durio zibethinus HOM05D001603 ORTHO05D001393 9.8e-08 60.5 38 55.3
PGSC0003DMG401030716 Solanum tuberosum HOM05D001603 ORTHO05D001393 9.8e-08 60.5 40 50.0
TWI34G1530 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 9.8e-08 60.5 34 61.8
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 1.3e-07 60.1 42 52.4
AL8G27510 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.3e-07 60.1 34 61.8
Thhalv10016069m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.3e-07 60.1 35 57.1
CARHR267040 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.7e-07 59.7 38 55.3
Sc18g0000140 Simmondsia chinensis HOM05D001603 ORTHO05D001393 1.7e-07 59.7 38 50.0
PGSC0003DMG400004472 Solanum tuberosum HOM05D001603 ORTHO05D001393 1.7e-07 59.7 35 60.0
Rhsim03G0252800 Rhododendron simsii HOM05D001603 ORTHO05D001393 2.2e-07 59.3 42 50.0
AT5G53742 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.8e-07 58.9 39 56.4
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 2.8e-07 58.9 35 54.3
CARHR042990 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.8e-07 58.9 35 62.9
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.8e-07 58.9 33 60.6
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.8e-07 58.9 33 60.6
Gorai.013G023600 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.8e-07 58.9 33 60.6
Gorai.013G023700 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.8e-07 58.9 33 60.6
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.8e-07 58.9 33 60.6
Peaxi162Scf00088g00821 Petunia axillaris HOM05D001603 ORTHO05D001393 3.7e-07 58.5 40 50.0
BcaC06g33682 Brassica carinata HOM05D001603 ORTHO05D001393 4.8e-07 58.2 38 57.9
A06p40030 Brassica napus HOM05D001603 ORTHO05D001393 4.8e-07 58.2 38 57.9
C04p54600 Brassica napus HOM05D001603 ORTHO05D001393 4.8e-07 58.2 31 67.7
C07p38140 Brassica napus HOM05D001603 ORTHO05D001393 4.8e-07 58.2 38 57.9
BolC7t44336H Brassica oleracea HOM05D001603 ORTHO05D001393 4.8e-07 58.2 38 57.9
BraA06t26918Z Brassica rapa HOM05D001603 ORTHO05D001393 4.8e-07 58.2 38 57.9
AL8G27490 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 6.3e-07 57.8 34 61.8
AT2G14378 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.3e-07 57.8 45 48.9
Carub.0008s2423 Capsella rubella HOM05D001603 ORTHO05D001393 6.3e-07 57.8 38 52.6
RcHm_v2.0_Chr2g0131141 Rosa chinensis HOM05D001603 ORTHO05D001393 6.3e-07 57.8 35 54.3
RcHm_v2.0_Chr2g0131221 Rosa chinensis HOM05D001603 ORTHO05D001393 6.3e-07 57.8 35 54.3
AT3G48675 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.3e-07 57.4 34 58.8
ECA234G4287 Erigeron canadensis HOM05D001603 ORTHO05D001393 8.3e-07 57.4 37 51.4
MD02G1018800 Malus domestica HOM05D001603 ORTHO05D001393 8.3e-07 57.4 35 57.1
AL8G27470 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.1e-06 57.0 34 58.8
AT2G27315 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.1e-06 57.0 34 58.8
AT5G53905 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.1e-06 57.0 39 51.3
BcaB05g21994 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-06 57.0 34 58.8
BcaB07g30090 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-06 57.0 38 52.6
Carub.0004s0795 Capsella rubella HOM05D001603 ORTHO05D001393 1.1e-06 57.0 34 58.8
Carub.0008s1317 Capsella rubella HOM05D001603 ORTHO05D001393 1.1e-06 57.0 34 61.8
CARHR277370 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.1e-06 57.0 35 60.0
Thhalv10029475m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.1e-06 57.0 34 58.8
RcHm_v2.0_Chr2g0149601 Rosa chinensis HOM05D001603 ORTHO05D001393 1.1e-06 57.0 35 57.1
Sp6g15130 Schrenkiella parvula HOM05D001603 ORTHO05D001393 1.1e-06 57.0 34 58.8
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.1e-06 57.0 35 57.1
AL7G16040 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.4e-06 56.6 35 60.0
C02p62770 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-06 56.6 41 51.2
C04p53860 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-06 56.6 43 51.2
BolC2t12348H Brassica oleracea HOM05D001603 ORTHO05D001393 1.4e-06 56.6 41 51.2
Thhalv10005396m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.4e-06 56.6 34 58.8
Sp6g09890 Schrenkiella parvula HOM05D001603 ORTHO05D001393 1.4e-06 56.6 34 58.8
SGA_v2.0_scaffold24G10427 Striga asiatica HOM05D001603 ORTHO05D001393 1.4e-06 56.6 35 60.0
AL4G21270 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.8e-06 56.2 34 58.8
AT5G52965 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.8e-06 56.2 34 58.8
AT5G52975 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.8e-06 56.2 34 58.8
BcaB07g29691 Brassica carinata HOM05D001603 ORTHO05D001393 1.8e-06 56.2 35 57.1
CARHR243480 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.8e-06 56.2 35 60.0
Thhalv10005158m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.8e-06 56.2 38 52.6
Thhalv10029307m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.8e-06 56.2 34 58.8
RcHm_v2.0_Chr2g0131241 Rosa chinensis HOM05D001603 ORTHO05D001393 1.8e-06 56.2 35 54.3
A02p42780 Brassica napus HOM05D001603 ORTHO05D001393 2.4e-06 55.8 35 57.1
A03p28440 Brassica napus HOM05D001603 ORTHO05D001393 2.4e-06 55.8 34 55.9
C03p34370 Brassica napus HOM05D001603 ORTHO05D001393 2.4e-06 55.8 34 55.9
BolC3t15747H Brassica oleracea HOM05D001603 ORTHO05D001393 2.4e-06 55.8 34 55.9
BraA02t09204Z Brassica rapa HOM05D001603 ORTHO05D001393 2.4e-06 55.8 35 57.1
BraA03t12049Z Brassica rapa HOM05D001603 ORTHO05D001393 2.4e-06 55.8 34 55.9
Carub.0007s0514 Capsella rubella HOM05D001603 ORTHO05D001393 2.4e-06 55.8 35 57.1
FvH4_4g12560 Fragaria vesca HOM05D001603 ORTHO05D001393 2.4e-06 55.8 32 62.5
FAN07G1734 Fragaria x ananassa HOM05D001603 ORTHO05D001393 2.4e-06 55.8 32 65.6
FAN12G3546 Fragaria x ananassa HOM05D001603 ORTHO05D001393 2.4e-06 55.8 32 62.5
FAN17G1385 Fragaria x ananassa HOM05D001603 ORTHO05D001393 2.4e-06 55.8 32 62.5
PSO384G2124 Papaver somniferum HOM05D001603 ORTHO05D001393 2.4e-06 55.8 38 52.6
PSO541G0615 Papaver somniferum HOM05D001603 ORTHO05D001393 2.4e-06 55.8 38 52.6
A02p42790 Brassica napus HOM05D001603 ORTHO05D001393 3.1e-06 55.5 34 58.8
BraA02t09205Z Brassica rapa HOM05D001603 ORTHO05D001393 3.1e-06 55.5 34 58.8
Carub.0008s1315 Capsella rubella HOM05D001603 ORTHO05D001393 3.1e-06 55.5 33 60.6
CiPaw.03G252200 Carya illinoinensis HOM05D001603 ORTHO05D001393 3.1e-06 55.5 42 47.6
Thhalv10005546m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 3.1e-06 55.5 34 55.9
RcHm_v2.0_Chr1g0323971 Rosa chinensis HOM05D001603 ORTHO05D001393 3.1e-06 55.5 35 54.3
Aqoxy1G00790 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 4.1e-06 55.1 35 51.4
AL8G40580 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 4.1e-06 55.1 35 57.1
AT4G35165 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.1e-06 55.1 45 46.7
BcaB05g21995 Brassica carinata HOM05D001603 ORTHO05D001393 4.1e-06 55.1 34 55.9
BcaC03g18210 Brassica carinata HOM05D001603 ORTHO05D001393 4.1e-06 55.1 41 48.8
A02p11400 Brassica napus HOM05D001603 ORTHO05D001393 4.1e-06 55.1 34 55.9
Carub.0008s0802 Capsella rubella HOM05D001603 ORTHO05D001393 4.1e-06 55.1 31 64.5
FvH4_1g02090 Fragaria vesca HOM05D001603 ORTHO05D001393 4.1e-06 55.1 32 62.5
FAN19G2115 Fragaria x ananassa HOM05D001603 ORTHO05D001393 4.1e-06 55.1 32 62.5
Peaxi162Scf01147g00112 Petunia axillaris HOM05D001603 ORTHO05D001393 4.1e-06 55.1 35 57.1
BcaC03g14471 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BcaC03g14473 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BcaC03g14476 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BcaC03g14477 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BcaC03g14478 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BcaC03g14479 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BcaC03g14480 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
A02p11420 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
A02p11430 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
A02p11440 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
A02p11450 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
A02p11460 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p18920 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p18930 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p18950 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p18990 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p19000 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p19030 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p19050 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p19070 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p19090 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p19110 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
C02p19140 Brassica napus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BolC2t08033H Brassica oleracea HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BolC2t08037H Brassica oleracea HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BolC2t08038H Brassica oleracea HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BolC2t08039H Brassica oleracea HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BolC2t08041H Brassica oleracea HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BolC2t08043H Brassica oleracea HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BolC2t08044H Brassica oleracea HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BraA02t06205Z Brassica rapa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BraA02t06207Z Brassica rapa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BraA02t06208Z Brassica rapa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BraA02t06210Z Brassica rapa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BraA02t06211Z Brassica rapa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
BraA02t06212Z Brassica rapa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
Carub.0008s2422 Capsella rubella HOM05D001603 ORTHO05D001393 5.4e-06 54.7 35 54.3
CARHR265940 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.4e-06 54.7 34 55.9
FAN22G0761 Fragaria x ananassa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 32 62.5
FAN28G2563 Fragaria x ananassa HOM05D001603 ORTHO05D001393 5.4e-06 54.7 32 62.5
HanXRQChr10g0314171 Helianthus annuus HOM05D001603 ORTHO05D001393 5.4e-06 54.7 36 52.8
Lj7C438T17 Lonicera japonica HOM05D001603 ORTHO05D001393 5.4e-06 54.7 35 57.1
C02p18980 Brassica napus HOM05D001603 ORTHO05D001393 7.0e-06 54.3 34 55.9
Nn2g12175 Nelumbo nucifera HOM05D001603 ORTHO05D001393 7.0e-06 54.3 38 50.0
Aa31LG5G23090 Aethionema arabicum HOM05D001603 ORTHO05D001393 9.1e-06 53.9 38 50.0
CARHR042770 Cardamine hirsuta HOM05D001603 ORTHO05D001393 9.1e-06 53.9 38 52.6
Gohir.D08G101050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 9.1e-06 53.9 35 51.4
Gorai.004G109000 Gossypium raimondii HOM05D001603 ORTHO05D001393 9.1e-06 53.9 35 54.3


User provided reference genes

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