Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 2.3e-60 235.3 115 100.0
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 5.3e-49 197.6 115 87.8
Rhsim01G0050000 Rhododendron simsii HOM05D016725 ORTHO05D003125 2.2e-47 192.2 103 92.2
Rhsim01G0052600 Rhododendron simsii HOM05D016725 ORTHO05D003125 8.1e-34 147.1 82 87.8
Rhsim01G0052500 Rhododendron simsii HOM05D016725 ORTHO05D003125 8.4e-31 137.1 116 69.0
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 1.5e-19 99.8 100 56.0
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 1.4e-14 83.2 145 40.0
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 3.2e-14 82.0 131 43.5
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.2e-14 81.6 143 44.1
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.2e-14 81.6 143 44.1
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 7.2e-14 80.9 131 41.2
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.6e-13 79.7 133 41.4
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.6e-13 79.7 133 41.4
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 6.1e-13 77.8 145 40.7
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 6.7e-12 74.3 139 40.3
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.1e-11 73.6 130 41.5
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.0e-11 72.8 139 41.7
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.0e-11 72.8 139 41.7
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.4e-11 70.9 127 38.6
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.2e-10 69.3 133 37.6
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 3.7e-10 68.6 120 35.8
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 8.2e-10 67.4 132 37.1
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 8.2e-10 67.4 134 34.3
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.4e-09 66.6 133 38.3
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.4e-09 66.6 130 39.2
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.4e-09 65.9 82 47.6
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.4e-09 65.9 101 44.6
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 4.1e-09 65.1 129 39.5
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 4.1e-09 65.1 69 53.6
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 6.9e-09 64.3 135 37.0
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 6.9e-09 64.3 127 37.8
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 9.1e-09 63.9 118 33.9
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 9.1e-09 63.9 82 47.6
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 9.1e-09 63.9 126 34.1
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 2.0e-08 62.8 150 36.0
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 2.6e-08 62.4 135 42.2
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.6e-08 62.4 128 37.5
HPP92_020081 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.6e-08 62.4 101 43.6
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.4e-08 62.0 75 48.0
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 3.4e-08 62.0 129 38.0
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.5e-08 61.6 146 39.7
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 5.9e-08 61.2 111 34.2
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 5.9e-08 61.2 134 32.8
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 5.9e-08 61.2 128 34.4
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 7.7e-08 60.8 82 46.3
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 7.7e-08 60.8 97 39.2
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.0e-07 60.5 140 31.4
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.7e-07 59.7 86 45.3
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.7e-07 59.7 80 42.5
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 1.7e-07 59.7 114 39.5
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.2e-07 59.3 121 35.5
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 2.9e-07 58.9 127 32.3
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 2.9e-07 58.9 132 36.4
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.8e-07 58.5 126 28.6
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 3.8e-07 58.5 73 47.9
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 3.8e-07 58.5 127 32.3
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.8e-07 58.5 117 32.5
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 8.5e-07 57.4 149 33.6
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 8.5e-07 57.4 138 37.0
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.1e-06 57.0 116 39.7
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.1e-06 57.0 131 33.6
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 1.9e-06 56.2 142 37.3
Os06g0646100 Oryza sativa ssp. japonica HOM05D021431 ORTHO05D003125 1.9e-06 56.2 110 38.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.9e-06 56.2 140 37.1
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.5e-06 55.8 73 47.9
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.5e-06 55.8 95 33.7
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.5e-06 55.8 111 40.5
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 3.2e-06 55.5 72 45.8
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 3.2e-06 55.5 131 38.2
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.2e-06 55.5 103 37.9
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 3.2e-06 55.5 81 40.7
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 3.2e-06 55.5 81 40.7
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.2e-06 55.5 64 51.6
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 5.5e-06 54.7 119 32.8
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 5.5e-06 54.7 149 34.9
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 7.2e-06 54.3 120 31.7
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 7.2e-06 54.3 68 44.1
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.2e-06 54.3 128 33.6
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 7.2e-06 54.3 120 30.8
Sabra18G0097300 Salix brachista HOM05D058315 ORTHO05D050431 9.4e-06 53.9 100 35.0


User provided reference genes

Program Settings