Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.2e-231 804.3 391 100.0
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.7e-201 703.7 387 87.6
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 8.5e-176 620.5 399 75.7
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.7e-169 599.0 390 74.4
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.5e-169 598.2 324 88.6
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.2e-141 505.0 342 76.3
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 9.2e-138 494.2 400 62.2
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 3.6e-134 482.3 385 61.3
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 4.0e-133 478.8 411 58.6
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 4.0e-133 478.8 411 58.6
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 7.6e-132 474.6 366 63.9
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.2e-131 473.0 446 55.6
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.6e-126 456.8 407 56.8
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 8.1e-126 454.5 405 57.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.4e-124 449.1 427 54.1
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 2.9e-123 446.0 409 56.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 2.9e-123 446.0 370 60.0
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 8.4e-123 444.5 423 53.0
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-120 436.8 420 54.8
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.7e-120 436.8 383 56.9
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 6.6e-120 434.9 413 53.5
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 8.1e-118 427.9 436 48.9
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 4.0e-117 425.6 434 49.5
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.6e-116 422.9 402 54.2
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 7.6e-116 421.4 402 54.0
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 2.2e-115 419.9 402 53.7
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.9e-115 418.7 441 52.4
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 2.4e-114 416.4 422 51.4
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 9.3e-114 414.5 413 53.8
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 9.3e-114 414.5 435 47.6
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.6e-113 413.7 456 48.9
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.6e-113 412.1 456 48.9
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.3e-112 410.6 457 49.0
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.8e-112 410.2 400 53.5
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 5.1e-112 408.7 411 50.9
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.8e-110 402.1 393 51.1
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 6.2e-110 401.7 437 49.2
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.8e-109 400.2 325 56.3
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.8e-109 400.2 332 57.2
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 3.1e-109 399.4 446 47.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 5.3e-109 398.7 402 49.8
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 5.3e-109 398.7 420 50.2
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.5e-108 397.1 382 51.0
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 2.0e-108 396.7 333 58.0
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.8e-108 395.2 423 49.6
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 5.8e-108 395.2 325 56.3
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 1.7e-107 393.7 332 56.9
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 1.7e-107 393.7 423 48.7
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.2e-107 393.3 378 51.1
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 2.2e-107 393.3 447 47.0
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 3.8e-107 392.5 428 47.2
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 3.8e-107 392.5 424 48.1
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 4.9e-107 392.1 397 48.9
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.1e-106 391.0 331 55.9
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 1.9e-106 390.2 378 51.1
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.5e-106 389.8 429 47.6
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 7.1e-106 388.3 426 47.9
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 9.3e-106 387.9 419 46.8
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.6e-105 387.1 382 51.8
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 1.6e-105 387.1 373 50.7
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.1e-105 386.7 377 49.1
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 4.6e-105 385.6 420 47.4
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.8e-104 383.6 320 57.8
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 5.1e-104 382.1 421 47.7
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.9e-103 380.2 388 47.9
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 5.7e-103 378.6 375 49.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 9.6e-103 377.9 383 49.3
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.7e-102 375.9 406 46.8
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 6.3e-102 375.2 396 48.0
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 6.3e-102 375.2 434 45.6
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 3.1e-101 372.9 318 57.9
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 5.3e-101 372.1 380 48.7
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 2.6e-100 369.8 323 53.3
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 3.4e-100 369.4 321 53.9
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 3.8e-99 365.9 319 53.3
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 8.4e-99 364.8 421 45.8
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.5e-98 363.2 442 42.8
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 5.5e-98 362.1 323 54.5
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 9.3e-98 361.3 429 44.8
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 9.3e-98 361.3 373 46.6
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 2.1e-97 360.1 317 54.9
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 2.1e-97 360.1 317 54.9
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.7e-97 359.8 397 44.8
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 6.1e-97 358.6 317 54.6
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 7.9e-97 358.2 318 54.7
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.0e-96 357.8 387 46.5
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 8.7e-96 354.8 315 54.0
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 8.7e-96 354.8 316 54.4
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.5e-95 354.0 399 45.4
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 2.5e-95 353.2 316 53.2
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 7.4e-95 351.7 357 49.0
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 9.7e-95 351.3 381 45.9
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.8e-94 349.7 398 44.0
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 4.8e-94 349.0 382 47.4
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 6.3e-94 348.6 382 47.1
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 6.3e-94 348.6 382 47.1
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 8.2e-94 348.2 469 42.6
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 2.4e-93 346.7 468 42.5
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.6e-92 343.2 318 51.3
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 1.0e-91 341.3 320 49.7
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.0e-91 341.3 414 43.2
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.0e-91 341.3 315 50.8
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.0e-91 341.3 377 48.0
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 8.5e-91 338.2 411 44.3
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 1.4e-90 337.4 386 45.9
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.2e-89 334.3 308 52.3
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 5.1e-88 328.9 378 45.0
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.3e-87 326.2 272 59.9
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 7.4e-87 325.1 361 46.3
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.4e-85 320.1 373 43.4
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 9.1e-85 318.2 353 46.2
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.4e-84 316.2 399 42.6
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.9e-83 313.2 397 40.8
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 3.6e-81 306.2 413 42.1
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 9.7e-79 298.1 387 41.1
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 2.2e-78 297.0 383 42.8
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.7e-78 296.2 243 56.4
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.1e-77 294.7 314 45.9
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.4e-77 294.3 322 45.0
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.1e-77 292.7 399 40.4
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.0e-76 290.4 317 46.4
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 2.9e-75 286.6 382 42.1
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.8e-72 277.3 332 43.4
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.7e-65 252.7 402 36.1
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.3e-62 244.6 303 43.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.1e-61 240.0 320 40.6
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 5.4e-61 239.2 373 37.0
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.6e-60 237.7 323 40.9
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 7.7e-60 235.3 275 45.1
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 2.9e-59 233.4 246 47.6
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.5e-58 231.1 305 40.3
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 5.2e-56 222.6 211 50.2
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 4.4e-55 219.5 314 36.6
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 7.5e-55 218.8 250 46.0
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 2.0e-52 210.7 333 37.2
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 4.7e-49 199.5 240 40.8
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 7.3e-42 175.6 188 47.9
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 7.0e-37 159.1 372 28.8
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 1.2e-36 158.3 123 62.6
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.3e-34 149.8 379 28.2
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.6e-34 149.4 145 53.8
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 1.9e-29 134.4 119 55.5
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.6e-28 129.8 187 40.6
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 2.3e-27 127.5 408 27.7
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.9e-27 126.7 187 39.6
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.3e-26 123.6 120 51.7
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 9.5e-26 122.1 246 36.2
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.8e-24 117.9 159 40.9
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.2e-22 110.9 174 35.1
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 7.1e-21 105.9 185 33.5
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 7.8e-20 102.4 95 48.4
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.1e-17 94.4 85 56.5
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 2.4e-16 90.9 86 47.7
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 7.6e-15 85.9 68 51.5
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 8.4e-14 82.4 88 47.7
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.4e-13 80.9 83 53.0
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 3.2e-13 80.5 104 43.3
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 7.1e-13 79.3 81 48.1
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.7e-11 74.7 70 51.4
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 2.3e-11 74.3 501 21.4
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 5.1e-11 73.2 205 29.3
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 5.6e-10 69.7 89 37.1
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 8.1e-09 65.9 337 22.6
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 3.1e-08 63.9 339 23.3
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 5.3e-08 63.2 135 27.4
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 5.3e-08 63.2 135 27.4
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 5.3e-08 63.2 336 22.6
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.2e-07 62.0 135 26.7
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.2e-07 62.0 135 26.7
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.2e-07 62.0 140 27.9
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.2e-07 62.0 327 23.2
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.2e-07 62.0 219 23.3
arahy.Tifrunner.gnm1.ann1.BDIQ8A Arachis hypogaea HOM05D000002 ORTHO05D006339 1.5e-07 61.6 202 24.3
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 1.5e-07 61.6 135 26.7
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.5e-07 61.6 351 21.4
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 2.0e-07 61.2 327 22.6
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 2.0e-07 61.2 216 23.6
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 2.0e-07 61.2 216 23.6
MD03G1215900 Malus domestica HOM05D002303 ORTHO05D007639 2.6e-07 60.8 237 20.3
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 2.6e-07 60.8 335 23.0
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 3.4e-07 60.5 338 22.8
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 3.4e-07 60.5 335 23.0
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.3e-06 58.5 333 22.8
Actinidia37976 Actinidia chinensis HOM05D005790 ORTHO05D007464 2.9e-06 57.4 152 34.2
Cfa013914 Carpinus fangiana HOM05D005790 ORTHO05D007464 2.9e-06 57.4 152 31.6
Haze_22599 Corylus avellana HOM05D005790 ORTHO05D007464 4.9e-06 56.6 143 31.5
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 8.4e-06 55.8 217 22.6
Nn1g03778 Nelumbo nucifera HOM05D002303 ORTHO05D007639 8.4e-06 55.8 181 23.2


User provided reference genes

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