Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 9.7e-186 653.3 318 100.0
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.9e-158 562.0 337 85.2
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.3e-141 505.4 342 76.3
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 5.0e-134 481.5 342 69.9
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.8e-123 446.4 333 66.4
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.6e-122 442.6 273 83.9
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 8.1e-108 394.4 336 58.0
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.1e-107 394.0 340 58.5
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 9.0e-107 391.0 347 56.5
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 9.0e-107 391.0 347 56.5
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 8.4e-105 384.4 340 57.6
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 7.1e-104 381.3 365 53.4
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.4e-99 367.1 337 54.3
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 5.3e-99 365.2 321 54.5
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 3.4e-98 362.5 318 55.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 4.5e-98 362.1 339 52.2
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 7.6e-98 361.3 319 54.5
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.1e-96 357.5 341 52.8
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 1.0e-94 350.9 321 53.3
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.9e-94 349.0 319 53.0
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 8.7e-94 347.8 321 52.6
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.1e-93 347.4 325 51.1
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.1e-93 347.4 319 52.7
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.5e-93 346.3 324 53.4
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.3e-93 345.9 320 52.8
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 5.6e-93 345.1 321 52.0
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.6e-92 343.6 319 52.0
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.6e-92 343.6 352 50.3
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 4.8e-92 342.0 320 53.4
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 8.1e-92 341.3 320 52.8
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 2.4e-91 339.7 322 50.9
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 6.9e-91 338.2 338 52.4
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 2.0e-90 336.7 340 51.2
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 3.4e-90 335.9 340 51.5
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 5.8e-90 335.1 355 48.2
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 9.9e-90 334.3 316 52.8
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.3e-89 334.0 323 50.5
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.3e-89 334.0 321 53.3
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 1.7e-89 333.6 343 50.7
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 2.2e-89 333.2 319 50.8
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.9e-89 332.8 343 50.4
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 3.8e-89 332.4 318 50.3
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 4.9e-89 332.0 318 50.3
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 6.4e-89 331.6 322 48.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 8.4e-89 331.3 323 49.5
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 8.4e-89 331.3 337 50.4
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 8.4e-89 331.3 317 53.0
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.4e-88 329.7 318 49.4
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 2.4e-88 329.7 325 50.2
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 3.2e-88 329.3 322 49.1
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 9.3e-88 327.8 319 49.2
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 9.3e-88 327.8 332 48.5
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.2e-87 327.4 319 49.2
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.6e-87 327.0 319 51.4
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 2.7e-87 326.2 314 52.2
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 2.7e-87 326.2 353 48.7
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 7.9e-87 324.7 319 49.2
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.0e-86 324.3 329 48.6
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.0e-86 324.3 314 49.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.3e-86 323.9 325 50.2
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 3.0e-86 322.8 320 47.8
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 6.7e-86 321.6 318 49.4
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 6.7e-86 321.6 318 49.4
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 6.7e-86 321.6 338 47.3
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-85 320.9 318 49.1
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.5e-85 320.5 318 49.4
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.5e-85 319.7 342 46.5
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.5e-85 319.7 318 49.1
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 2.5e-85 319.7 350 45.7
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 4.3e-85 318.9 318 50.9
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 4.3e-85 318.9 321 49.5
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 5.6e-85 318.5 340 48.2
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.8e-84 316.2 346 45.1
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 3.7e-84 315.8 315 48.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 4.0e-83 312.4 318 48.4
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.2e-82 310.8 352 46.0
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.5e-82 310.5 319 48.3
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.0e-81 307.8 290 53.4
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.3e-81 307.4 277 52.7
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 2.2e-81 306.6 317 49.5
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 2.2e-81 306.6 317 49.5
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 2.9e-81 306.2 316 48.1
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 3.8e-81 305.8 313 49.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 4.9e-81 305.4 322 46.6
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 4.9e-81 305.4 233 61.4
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 6.5e-81 305.1 314 46.5
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 8.4e-81 304.7 317 49.2
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.4e-80 303.9 318 49.1
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.9e-80 303.5 316 49.4
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 1.9e-80 303.5 312 46.8
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.5e-80 302.0 316 48.4
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 7.1e-80 301.6 330 45.5
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 2.7e-79 299.7 320 46.9
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.7e-79 299.7 323 46.4
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 5.1e-78 295.4 343 43.4
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 8.7e-78 294.7 315 45.4
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 3.3e-77 292.7 329 48.3
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 4.3e-77 292.4 314 47.1
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 4.3e-77 292.4 329 47.1
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 4.3e-77 292.4 329 47.1
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 6.9e-75 285.0 318 45.6
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 9.0e-75 284.6 317 46.4
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 9.0e-75 284.6 338 45.9
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 2.0e-74 283.5 315 46.0
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 2.0e-74 283.5 305 47.5
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.0e-74 283.5 299 47.5
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.0e-73 281.2 285 49.1
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 2.9e-73 279.6 332 44.0
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 4.6e-71 272.3 356 41.0
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 7.9e-71 271.6 299 46.2
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 1.4e-70 270.8 318 44.7
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.8e-70 270.4 300 47.7
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.8e-70 270.4 336 42.6
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 6.9e-67 258.5 293 47.4
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.5e-64 250.0 334 39.8
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.5e-64 250.0 319 41.7
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 2.1e-63 246.9 314 42.7
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.0e-62 244.6 330 42.1
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.3e-62 243.4 332 40.1
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 2.0e-61 240.4 255 48.2
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 9.7e-61 238.0 294 43.5
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.7e-60 236.1 314 40.8
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 1.8e-59 233.8 338 39.6
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.5e-58 229.2 243 49.0
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 5.9e-58 228.8 211 50.2
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.5e-53 214.2 191 57.1
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 4.1e-51 206.1 170 55.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 6.1e-47 192.2 320 36.2
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 3.3e-45 186.4 315 34.3
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.8e-44 183.3 375 31.7
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.8e-43 180.6 355 33.5
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.9e-41 173.3 323 33.7
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 9.8e-37 158.3 251 37.8
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 5.4e-35 152.5 213 39.4
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 1.2e-34 151.4 123 59.3
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.6e-34 151.0 224 38.4
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.3e-33 147.1 145 53.8
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.2e-29 134.8 240 33.8
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 5.4e-27 125.9 116 53.4
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.9e-26 122.5 120 52.5
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 5.6e-24 115.9 135 47.4
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 1.2e-23 114.8 95 52.6
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 4.7e-23 112.8 296 29.7
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 6.1e-23 112.5 245 32.7
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 8.9e-22 108.6 85 58.8
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 9.8e-21 105.1 184 33.7
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 1.7e-17 94.4 79 59.5
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.0e-17 93.6 83 54.2
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 3.9e-17 93.2 86 50.0
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 5.0e-17 92.8 68 51.5
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 2.5e-16 90.5 68 58.8
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 8.9e-14 82.0 326 24.2
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 1.3e-12 78.2 76 52.6
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.9e-12 77.0 70 51.4
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.5e-08 64.7 142 30.3
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 9.5e-08 62.0 227 22.5
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.1e-07 60.8 311 22.2
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 2.8e-07 60.5 267 23.6
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 4.7e-07 59.7 267 23.6
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 6.2e-07 59.3 135 26.7
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 6.2e-07 59.3 135 26.7
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 8.1e-07 58.9 265 23.0
BolC1t04878H Brassica oleracea HOM05D000684 ORTHO05D000688 1.1e-06 58.5 93 36.6
Pp3c1_24850 Physcomitrium patens HOM05D000684 ORTHO05D000688 1.1e-06 58.5 94 31.9
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.4e-06 58.2 135 25.9
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 1.4e-06 58.2 135 25.9
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 1.4e-06 58.2 140 27.1
BcaC09g48495 Brassica carinata HOM05D000684 ORTHO05D000688 1.8e-06 57.8 93 34.4
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 1.8e-06 57.8 135 25.9
Eucgr.F03314 Eucalyptus grandis HOM05D000684 ORTHO05D000688 1.8e-06 57.8 93 35.5
AL6G45270 Arabidopsis lyrata HOM05D000684 ORTHO05D000688 2.3e-06 57.4 90 35.6
AT4G11110 Arabidopsis thaliana HOM05D000684 ORTHO05D000688 2.3e-06 57.4 90 35.6
Carub.0006s2993 Capsella rubella HOM05D000684 ORTHO05D000688 2.3e-06 57.4 90 35.6
Thhalv10028383m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 2.3e-06 57.4 90 35.6
Sp6g06310 Schrenkiella parvula HOM05D000684 ORTHO05D000688 2.3e-06 57.4 90 35.6
BcaB05g24152 Brassica carinata HOM05D000684 ORTHO05D000688 3.1e-06 57.0 90 34.4
BcaC04g21108 Brassica carinata HOM05D000684 ORTHO05D000688 3.1e-06 57.0 90 34.4
CARHR255480 Cardamine hirsuta HOM05D000684 ORTHO05D000688 4.0e-06 56.6 90 35.6
Haze_09429 Corylus avellana HOM05D000684 ORTHO05D000688 4.0e-06 56.6 98 33.7
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 4.0e-06 56.6 269 26.0
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 5.2e-06 56.2 267 24.0
Lalb_Chr25g0286351 Lupinus albus HOM05D000684 ORTHO05D000688 5.2e-06 56.2 91 33.0
Manes.01G248600 Manihot esculenta HOM05D000684 ORTHO05D000688 8.9e-06 55.5 116 30.2
THA.LOC104818079 Tarenaya hassleriana HOM05D000684 ORTHO05D000688 8.9e-06 55.5 97 32.0


User provided reference genes

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