Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.6e-230 802.4 392 100.0
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.5e-199 699.5 435 82.8
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 4.6e-137 491.9 377 68.2
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.3e-127 458.8 343 70.6
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.3e-127 458.8 343 70.6
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.1e-125 454.1 401 60.1
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.1e-125 454.1 401 60.1
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.9e-122 443.4 406 57.1
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 3.0e-120 436.0 378 61.6
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.1e-119 434.1 373 61.4
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 4.3e-119 432.2 361 62.9
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 5.6e-119 431.8 376 59.8
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.1e-118 429.9 309 70.6
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 2.8e-118 429.5 377 59.4
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 6.2e-118 428.3 372 58.6
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 4.0e-117 425.6 360 60.0
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 5.3e-117 425.2 386 58.0
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 9.0e-117 424.5 372 59.7
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 1.2e-116 424.1 351 61.0
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.0e-116 423.3 296 72.6
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 3.8e-115 419.1 348 61.2
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 4.2e-114 415.6 342 61.7
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 9.3e-114 414.5 341 61.6
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.6e-113 413.7 380 58.4
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.9e-112 409.1 364 59.6
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 3.3e-111 406.0 362 59.4
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 2.8e-110 402.9 345 60.3
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.1e-109 401.0 359 58.5
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.4e-109 399.8 387 54.8
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 3.1e-109 399.4 385 56.4
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 3.1e-109 399.4 436 50.9
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 4.1e-109 399.1 341 60.1
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 6.9e-109 398.3 387 54.3
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 2.0e-108 396.7 386 57.0
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 4.5e-108 395.6 376 56.6
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 3.8e-107 392.5 367 57.8
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 9.3e-106 387.9 376 55.1
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.1e-105 386.7 297 68.0
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 1.0e-104 384.4 325 60.3
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.3e-104 384.0 394 54.6
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 1.3e-104 384.0 419 52.5
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.9e-103 380.2 382 54.5
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 2.5e-103 379.8 371 58.0
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 5.7e-103 378.6 292 63.7
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 5.7e-103 378.6 353 56.1
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 5.7e-103 378.6 347 55.0
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 5.3e-101 372.1 375 54.4
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 9.1e-101 371.3 370 54.3
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 2.0e-100 370.2 381 54.9
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 2.6e-100 369.8 342 56.4
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 5.9e-100 368.6 351 55.6
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 7.7e-100 368.2 376 55.6
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 1.7e-99 367.1 412 48.8
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 2.1e-97 360.1 296 62.2
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 2.1e-97 360.1 296 62.2
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 4.6e-97 359.0 394 51.3
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.4e-96 357.5 394 50.0
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 1.8e-96 357.1 351 53.8
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 5.7e-95 352.1 350 52.3
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 5.3e-93 345.5 296 59.5
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.5e-92 342.4 356 51.1
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 1.3e-91 340.9 371 53.1
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.8e-91 339.3 305 58.7
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 6.5e-91 338.6 351 52.4
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 1.4e-90 337.4 254 68.1
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 3.2e-90 336.3 341 55.1
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 5.5e-90 335.5 303 57.1
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 1.6e-89 334.0 345 51.3
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 2.1e-89 333.6 350 53.7
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 2.1e-89 333.6 253 65.6
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 7.9e-89 331.6 362 52.5
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 1.8e-88 330.5 406 46.6
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 2.3e-88 330.1 301 55.1
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 5.2e-88 328.9 241 65.1
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 6.7e-88 328.6 344 52.0
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 3.3e-87 326.2 341 53.1
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 9.7e-87 324.7 345 53.0
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 2.8e-86 323.2 341 52.2
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 1.4e-85 320.9 243 64.6
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 3.1e-85 319.7 347 51.0
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.2e-84 317.8 355 50.7
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 1.6e-84 317.4 233 68.2
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 4.5e-84 315.8 333 51.4
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 5.9e-84 315.5 397 46.6
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 7.7e-84 315.1 354 50.6
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 2.9e-83 313.2 332 52.4
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 6.5e-83 312.0 352 50.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 8.0e-81 305.1 244 63.5
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 1.5e-79 300.8 369 46.9
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 3.3e-79 299.7 327 49.2
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 1.1e-77 294.7 369 44.2
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 3.1e-77 293.1 254 58.3
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 4.1e-77 292.7 232 63.4
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 7.0e-77 292.0 250 60.4
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.3e-75 287.7 350 47.1
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 2.7e-73 280.0 240 59.2
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 2.6e-71 273.5 356 44.1
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 5.7e-71 272.3 264 54.5
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 9.1e-69 265.0 198 67.2
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 1.9e-66 257.3 359 43.5
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 5.2e-64 249.2 251 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 9.8e-63 245.0 365 41.9
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.0e-61 238.8 343 40.8
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 1.1e-58 231.5 160 66.2
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.5e-58 231.1 346 38.4
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 4.3e-58 229.6 364 43.4
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 4.7e-57 226.1 219 53.0
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.4e-56 224.6 215 52.1
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 5.2e-56 222.6 364 37.9
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.5e-55 221.1 222 56.8
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.6e-55 220.3 280 45.0
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 1.8e-53 214.2 222 53.2
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.7e-51 207.6 341 42.2
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 9.5e-50 201.8 149 63.8
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.2e-49 201.4 172 62.8
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 6.2e-49 199.1 198 55.6
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 9.5e-42 175.3 311 36.7
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 1.1e-37 161.8 125 63.2
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 2.1e-36 157.5 137 58.4
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 5.1e-35 152.9 167 47.9
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 5.1e-35 152.9 196 43.9
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.9e-30 137.1 102 61.8
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.7e-28 130.6 105 62.9
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 4.9e-22 109.8 92 62.0
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 1.1e-21 108.6 115 53.9
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 9.6e-18 95.5 105 52.4
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 2.8e-17 94.0 88 53.4
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.2e-14 84.3 97 46.4
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.9e-10 71.2 121 41.3
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.3e-09 68.6 57 52.6
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.2e-06 57.8 43 55.8


User provided reference genes

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