Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 2004.6 1057 100.0
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1969.5 1113 94.3
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1960.7 1093 95.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1773.1 1095 84.7
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1614.7 1096 79.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1605.5 1096 79.4
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1540.4 1085 77.1
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1532.7 1084 75.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1531.5 1097 73.5
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1528.5 1094 74.5
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1505.7 1094 73.8
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1501.5 1094 71.3
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1494.9 1098 72.5
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1491.5 1088 73.3
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 1094 70.9
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 1094 70.9
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1488.0 1096 73.9
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1487.2 1058 72.7
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1484.9 1094 72.9
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1481.1 1121 71.6
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1479.2 1097 70.6
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1475.7 1088 74.0
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1474.5 1093 73.2
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1467.6 1107 72.7
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1466.1 1078 71.7
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1465.7 1094 72.1
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1458.7 1101 72.6
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1457.6 1087 71.2
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1456.4 1096 72.7
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1452.6 1075 72.6
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1450.3 1078 71.2
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1449.9 1092 72.2
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1447.6 1077 70.3
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1444.5 1095 71.7
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1444.1 1094 71.3
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1441.8 1094 71.3
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1441.8 1094 70.8
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1439.9 1119 70.2
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1437.2 1095 71.3
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1434.9 1093 71.4
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1434.1 1096 70.6
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1431.8 1096 69.4
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 1096 70.6
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1430.2 1093 70.6
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1429.5 1096 70.3
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1423.7 1095 70.0
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1423.3 1086 70.3
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1422.9 1120 69.9
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1422.9 978 74.8
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1421.4 1134 68.3
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1419.8 1056 71.0
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1419.8 1078 71.8
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1417.1 1109 68.6
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1411.7 1066 71.9
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1411.4 896 82.0
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1401.0 1089 69.5
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1396.7 1197 65.2
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1396.7 1144 69.0
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1391.3 1095 67.4
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1386.3 1103 68.4
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1381.7 868 79.1
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1379.4 1120 68.5
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1377.5 869 78.4
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1375.5 869 78.3
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1374.8 869 78.0
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1369.4 1107 69.5
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1367.8 1140 67.3
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1363.6 1051 70.2
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1362.8 1105 69.7
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1361.3 1087 68.8
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1355.1 1047 69.7
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1352.8 1088 66.3
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1352.4 1007 70.3
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1350.9 1056 68.1
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1339.3 1085 66.4
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1338.2 1226 61.1
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1325.1 1098 64.7
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1322.0 1069 65.8
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1319.7 953 70.5
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1312.7 1095 64.5
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1312.7 1070 67.5
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1304.7 954 68.7
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1304.3 869 75.4
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1302.3 955 68.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1300.4 1045 65.6
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1297.7 1098 67.2
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1288.9 954 68.1
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1288.9 954 68.1
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1287.7 954 68.0
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1286.9 1104 64.3
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1285.8 987 67.7
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1281.9 1202 59.3
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1273.8 1091 62.3
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1265.4 1057 63.9
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1253.0 1105 61.0
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1243.0 1052 61.9
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1206.8 884 68.7
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1134.8 1080 57.6
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1124.8 880 63.6
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1103.2 955 60.7
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1098.6 1066 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 1.9e-307 1059.3 947 59.2
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 1.1e-305 1053.5 692 76.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.4e-305 1053.1 690 77.0
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.5e-262 910.2 687 69.3
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 3.4e-251 872.5 744 58.5
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.9e-246 856.7 546 78.6
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.3e-244 849.7 631 68.1
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 4.9e-242 842.0 1085 48.0
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.2e-177 626.7 519 69.2
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.7e-173 614.4 570 56.0
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 9.2e-140 502.3 448 59.2
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.2e-126 458.8 318 73.0
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.8e-126 455.7 416 59.6
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 2.4e-124 451.1 431 64.5
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.9e-116 424.9 403 62.5
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 5.6e-105 386.7 368 53.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 6.9e-95 353.2 495 43.2
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 9.0e-95 352.8 235 71.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 3.0e-90 337.8 278 61.5
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 2.1e-75 288.5 197 73.1
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 9.7e-73 279.6 1026 26.0
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.2e-70 272.7 322 50.6
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 6.3e-64 250.4 134 86.6
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 3.4e-62 244.6 1022 24.5
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.5e-60 237.3 383 37.6
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 2.0e-54 218.8 313 50.8
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.0e-49 202.2 134 73.9
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 5.3e-47 194.1 215 51.2
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 2.9e-45 188.3 99 90.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 4.7e-43 181.0 251 45.8
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.0e-42 179.9 107 83.2
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 1.8e-42 179.1 208 48.6
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.4e-41 174.5 108 77.8
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 6.3e-40 170.6 103 75.7
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.1e-39 167.9 149 61.1
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 5.4e-39 167.5 237 44.3
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 5.4e-39 167.5 224 42.9
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.4e-34 152.9 121 62.8
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.7e-33 147.5 119 58.8
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.0e-29 134.4 93 74.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 6.6e-29 134.0 150 52.0
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 8.6e-29 133.7 88 72.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 4.3e-28 131.3 150 51.3
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-25 122.9 86 72.1
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.0e-22 112.5 72 76.4
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.6e-22 111.3 85 71.8
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 5.0e-21 107.8 97 67.0
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-19 103.2 231 36.4
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.1e-19 102.4 67 74.6
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.5e-17 96.3 79 58.2
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.4e-17 95.1 59 76.3
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-16 93.2 130 43.8
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 8.3e-16 90.5 51 84.3
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.9e-15 89.4 47 95.7
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 4.6e-14 84.7 117 53.0
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.6e-13 80.5 62 62.9
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.1e-12 80.1 53 79.2
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.3e-12 78.6 190 36.8
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.3e-12 78.2 106 44.3
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 1.2e-09 70.1 260 23.8
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 2.6e-09 68.9 63 52.4
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 4.4e-09 68.2 107 43.9
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 9.8e-09 67.0 66 51.5
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-08 66.6 97 42.3
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-08 66.6 97 42.3
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-08 66.6 97 42.3
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 4.9e-08 64.7 77 44.2
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 1.2e-06 60.1 77 41.6
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 1.2e-06 60.1 231 20.3
Actinidia38473 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.7e-06 58.9 177 32.8
RcHm_v2.0_Chr4g0393431 Rosa chinensis HOM05D001291 ORTHO05D344523 2.7e-06 58.9 83 36.1
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 7.8e-06 57.4 51 54.9
SEGI_17061 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.8e-06 57.4 44 56.8


User provided reference genes

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