Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0037300 Rhododendron simsii HOM05D000741 ORTHO05D338529 5.5e-115 417.5 196 100.0
Rhsim01G0039100 Rhododendron simsii HOM05D000741 ORTHO05D000506 2.3e-12 76.6 72 54.2
Rhsim01G0039400 Rhododendron simsii HOM05D000741 ORTHO05D000506 3.0e-12 76.3 97 47.4
vmacro15533 Vaccinium macrocarpon HOM05D000741 ORTHO05D000506 5.1e-12 75.5 102 42.2
Rhsim01G0037100 Rhododendron simsii HOM05D000013 ORTHO05D015198 1.7e-10 70.5 45 71.1
Rhsim01G0039300 Rhododendron simsii HOM05D000741 ORTHO05D000506 2.2e-10 70.1 40 75.0
Rhsim01G0187600 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.2e-10 70.1 40 80.0
Rhsim01G0188700 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.2e-10 70.1 40 80.0
Sc08g0005500 Simmondsia chinensis HOM05D000013 ORTHO05D028526 1.2e-08 64.3 77 46.8
Gohir.A13G185100 Gossypium hirsutum HOM05D000013 ORTHO05D000506 5.9e-08 62.0 34 79.4
Duzib168G0055 Durio zibethinus HOM05D000013 ORTHO05D014604 7.7e-08 61.6 50 56.0
Eucgr.L01119 Eucalyptus grandis HOM05D000013 ORTHO05D000506 7.7e-08 61.6 72 41.7
Manes.14G144300 Manihot esculenta HOM05D000741 ORTHO05D000506 7.7e-08 61.6 93 39.8
Eucgr.C00396 Eucalyptus grandis HOM05D000741 ORTHO05D000506 1.0e-07 61.2 65 46.2
Ciclev10007520m.g Citrus clementina HOM05D000741 ORTHO05D000506 1.3e-07 60.8 34 76.5
PGR142G2102 Punica granatum HOM05D000741 ORTHO05D000506 1.3e-07 60.8 94 37.2
TWI32G0881 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 1.3e-07 60.8 91 39.6
GSVIVG01007370001 Vitis vinifera HOM05D000013 ORTHO05D000506 1.3e-07 60.8 70 44.3
GSVIVG01007371001 Vitis vinifera HOM05D000741 ORTHO05D000506 1.3e-07 60.8 34 76.5
Cc06_g15450 Coffea canephora HOM05D000013 ORTHO05D000506 1.7e-07 60.5 66 48.5
Eucgr.C00386 Eucalyptus grandis HOM05D000741 ORTHO05D000506 1.7e-07 60.5 53 49.1
Eucgr.C00389 Eucalyptus grandis HOM05D000741 ORTHO05D000506 1.7e-07 60.5 94 37.2
Gohir.A13G185000 Gossypium hirsutum HOM05D000741 ORTHO05D000506 1.7e-07 60.5 34 76.5
Gohir.D13G191500 Gossypium hirsutum HOM05D000741 ORTHO05D000506 1.7e-07 60.5 34 76.5
Gorai.013G217500 Gossypium raimondii HOM05D000013 ORTHO05D000506 1.7e-07 60.5 34 76.5
vmacro21867 Vaccinium macrocarpon HOM05D000741 ORTHO05D000506 1.7e-07 60.5 38 71.1
GSVIVG01001061001 Vitis vinifera HOM05D000013 ORTHO05D000506 2.2e-07 60.1 68 44.1
RcHm_v2.0_Chr2g0086191 Rosa chinensis HOM05D000741 ORTHO05D000506 2.9e-07 59.7 34 73.5
RcHm_v2.0_Chr6g0247981 Rosa chinensis HOM05D000013 ORTHO05D000506 2.9e-07 59.7 34 73.5
Gohir.A13G185200 Gossypium hirsutum HOM05D000013 ORTHO05D000506 3.8e-07 59.3 34 70.6
Gorai.013G217600 Gossypium raimondii HOM05D000741 ORTHO05D000506 3.8e-07 59.3 34 70.6
MD02G1011200 Malus domestica HOM05D000741 ORTHO05D000506 3.8e-07 59.3 66 47.0
PGR142G0036 Punica granatum HOM05D000741 ORTHO05D000506 3.8e-07 59.3 60 48.3
Eucgr.C00384 Eucalyptus grandis HOM05D000013 ORTHO05D000506 5.0e-07 58.9 53 49.1
QL02p092207 Quercus lobata HOM05D000013 ORTHO05D000506 5.0e-07 58.9 49 55.1
Haze_18528 Corylus avellana HOM05D000741 ORTHO05D000506 6.5e-07 58.5 34 73.5
Haze_19283 Corylus avellana HOM05D000741 ORTHO05D000506 6.5e-07 58.5 34 73.5
FvH4_1g01390 Fragaria vesca HOM05D000013 ORTHO05D000506 6.5e-07 58.5 34 73.5
FvH4_1g01420 Fragaria vesca HOM05D000013 ORTHO05D000506 6.5e-07 58.5 34 73.5
FAN23G0618 Fragaria x ananassa HOM05D000741 ORTHO05D000506 6.5e-07 58.5 34 73.5
Prupe.7G258700 Prunus persica HOM05D000013 ORTHO05D000506 6.5e-07 58.5 33 75.8
Prupe.7G258800 Prunus persica HOM05D000741 ORTHO05D000506 6.5e-07 58.5 33 75.8
TWI32G1335 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 6.5e-07 58.5 41 68.3
Gohir.D13G191700 Gossypium hirsutum HOM05D000741 ORTHO05D000506 8.5e-07 58.2 34 70.6
RcHm_v2.0_Chr1g0337661 Rosa chinensis HOM05D000013 ORTHO05D000011 8.5e-07 58.2 171 30.4
MD10G1206700 Malus domestica HOM05D000013 ORTHO05D000011 1.1e-06 57.8 57 45.6
Oeu050469.2 Olea europaea HOM05D000741 ORTHO05D000506 1.1e-06 57.8 38 63.2
RcHm_v2.0_Chr2g0086211 Rosa chinensis HOM05D000013 ORTHO05D000506 1.1e-06 57.8 34 70.6
Thecc.09G035600 Theobroma cacao HOM05D000741 ORTHO05D000506 1.1e-06 57.8 34 70.6
Duzib168G0992 Durio zibethinus HOM05D000741 ORTHO05D000506 1.4e-06 57.4 55 47.3
FvH4_1g01363 Fragaria vesca HOM05D000013 ORTHO05D000506 1.4e-06 57.4 34 70.6
FAN19G0376 Fragaria x ananassa HOM05D000013 ORTHO05D000506 1.4e-06 57.4 34 70.6
FAN19G1141 Fragaria x ananassa HOM05D000741 ORTHO05D000506 1.4e-06 57.4 34 70.6
FAN26G0945 Fragaria x ananassa HOM05D000741 ORTHO05D000506 1.4e-06 57.4 34 70.6
Gohir.D13G191600 Gossypium hirsutum HOM05D000741 ORTHO05D000506 1.4e-06 57.4 34 67.6
Lalb_Chr07g0179671 Lupinus albus HOM05D000741 ORTHO05D000506 1.4e-06 57.4 75 42.7
Cfa016765 Carpinus fangiana HOM05D000741 ORTHO05D000506 1.9e-06 57.0 34 70.6
Haze_19775 Corylus avellana HOM05D000741 ORTHO05D000506 1.9e-06 57.0 34 70.6
Gohir.D07G028800 Gossypium hirsutum HOM05D000741 ORTHO05D000506 1.9e-06 57.0 50 52.0
Gorai.001G030200 Gossypium raimondii HOM05D000741 ORTHO05D000506 1.9e-06 57.0 50 52.0
QL02p092109 Quercus lobata HOM05D000013 ORTHO05D000506 1.9e-06 57.0 47 53.2
Lj4g0025435 Lotus japonicus HOM05D000741 ORTHO05D000506 2.5e-06 56.6 34 67.6
QL02p092160 Quercus lobata HOM05D000013 ORTHO05D000506 2.5e-06 56.6 47 53.2
CSS0010247 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000506 3.2e-06 56.2 31 77.4
FvH4_1g01350 Fragaria vesca HOM05D000741 ORTHO05D000506 3.2e-06 56.2 34 70.6
FvH4_1g01365 Fragaria vesca HOM05D000013 ORTHO05D000506 3.2e-06 56.2 34 70.6
Lj7A128T15 Lonicera japonica HOM05D000013 ORTHO05D000011 3.2e-06 56.2 40 62.5
Lj7A128T16 Lonicera japonica HOM05D000013 ORTHO05D000011 3.2e-06 56.2 40 62.5
Potri.001G412300 Populus trichocarpa HOM05D000013 ORTHO05D000011 3.2e-06 56.2 40 62.5
RcHm_v2.0_Chr2g0160801 Rosa chinensis HOM05D000013 ORTHO05D000506 3.2e-06 56.2 74 43.2
HPP92_012329 Vanilla planifolia HOM05D000022 ORTHO05D000071 3.2e-06 56.2 113 33.6
Eucgr.C00399 Eucalyptus grandis HOM05D000741 ORTHO05D000506 4.2e-06 55.8 66 42.4
Gohir.A07G025280 Gossypium hirsutum HOM05D000741 ORTHO05D000506 4.2e-06 55.8 50 52.0
QL02p077764 Quercus lobata HOM05D000741 ORTHO05D000506 4.2e-06 55.8 47 53.2
TWI34G1137 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 4.2e-06 55.8 33 75.8
Duzib168G0323 Durio zibethinus HOM05D000741 ORTHO05D000506 5.5e-06 55.5 34 67.6
Potri.018G111900 Populus trichocarpa HOM05D000741 ORTHO05D000506 5.5e-06 55.5 34 70.6
RcHm_v2.0_Chr2g0086321 Rosa chinensis HOM05D000741 ORTHO05D000506 5.5e-06 55.5 74 43.2
TWI34G0122 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 5.5e-06 55.5 46 60.9
Atru.chr1.2736 Acer truncatum HOM05D000013 ORTHO05D000506 7.2e-06 55.1 34 70.6
Aqoxy4G03202 Aquilegia oxysepala HOM05D000013 ORTHO05D000011 7.2e-06 55.1 39 56.4
Cfa005355 Carpinus fangiana HOM05D000741 ORTHO05D126216 7.2e-06 55.1 33 72.7
Lj9C712T3 Lonicera japonica HOM05D000741 ORTHO05D000506 7.2e-06 55.1 32 75.0
Prupe.4G135600 Prunus persica HOM05D000013 ORTHO05D000011 7.2e-06 55.1 45 51.1
TWI34G1025 Tripterygium wilfordii HOM05D000741 ORTHO05D000506 7.2e-06 55.1 34 64.7
vmacro20148 Vaccinium macrocarpon HOM05D000741 ORTHO05D000506 7.2e-06 55.1 34 70.6
CSS0010090 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 9.4e-06 54.7 33 72.7
CANSAT11G0552 Cannabis sativa HOM05D000013 ORTHO05D000011 9.4e-06 54.7 85 41.2
AUR62014588 Chenopodium quinoa HOM05D000022 ORTHO05D000071 9.4e-06 54.7 52 51.9
AUR62014601 Chenopodium quinoa HOM05D000022 ORTHO05D000071 9.4e-06 54.7 52 51.9
Ca_12638_v3 Cicer arietinum L. HOM05D000013 ORTHO05D000011 9.4e-06 54.7 127 31.5
COL.COLO4_20112 Corchorus olitorius HOM05D000741 ORTHO05D000506 9.4e-06 54.7 36 66.7
ECA234G0819 Erigeron canadensis HOM05D000054 ORTHO05D000171 9.4e-06 54.7 96 35.4
Migut.K00355 Erythranthe guttata HOM05D000741 ORTHO05D000506 9.4e-06 54.7 33 75.8
Psat7g107120 Pisum sativum HOM05D000013 ORTHO05D000011 9.4e-06 54.7 43 55.8
Rhsim01G0039800 Rhododendron simsii HOM05D000741 ORTHO05D000506 9.4e-06 54.7 34 64.7
Thecc.09G035900 Theobroma cacao HOM05D000741 ORTHO05D000506 9.4e-06 54.7 34 70.6
TAR627G1169 Trochodendron aralioides HOM05D000013 ORTHO05D000011 9.4e-06 54.7 34 67.6


User provided reference genes

Program Settings