Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 1.0e-123 446.8 233 100.0
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 4.7e-89 331.6 283 68.6
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 8.6e-83 310.8 224 76.3
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 6.2e-81 304.7 224 70.5
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 3.9e-75 285.4 226 66.8
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 5.1e-75 285.0 224 67.4
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.0e-72 275.4 224 65.6
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 4.4e-71 271.9 224 65.2
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 5.8e-71 271.6 224 62.5
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 1.2e-68 263.8 225 63.1
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 2.7e-68 262.7 225 62.2
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 4.6e-68 261.9 179 80.4
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 3.9e-67 258.8 225 59.6
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 3.9e-67 258.8 229 63.3
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 8.7e-67 257.7 224 64.7
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 1.9e-66 256.5 228 61.4
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 3.3e-66 255.8 224 62.9
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 1.6e-65 253.4 236 58.9
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.6e-65 253.4 230 62.2
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 2.1e-65 253.1 225 62.2
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 2.8e-65 252.7 225 61.3
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 3.6e-65 252.3 226 63.7
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 4.8e-65 251.9 224 60.3
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 8.1e-65 251.1 224 60.3
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 8.1e-65 251.1 224 58.9
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 8.1e-65 251.1 238 58.8
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 1.4e-64 250.4 227 62.1
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 1.4e-64 250.4 224 64.3
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 1.8e-64 250.0 224 60.3
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 2.4e-64 249.6 224 59.8
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.4e-64 249.6 224 60.3
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 3.1e-64 249.2 230 57.8
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 3.1e-64 249.2 217 60.4
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 4.0e-64 248.8 224 59.8
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 5.3e-64 248.4 229 62.0
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 5.3e-64 248.4 226 59.7
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 6.9e-64 248.1 224 59.4
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.5e-63 246.9 224 61.6
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.0e-63 246.5 230 58.7
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.6e-63 246.1 224 63.4
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.6e-63 246.1 224 59.8
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 5.8e-63 245.0 226 60.6
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 7.6e-63 244.6 225 59.1
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 1.3e-62 243.8 224 58.9
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 1.3e-62 243.8 225 60.4
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 1.7e-62 243.4 224 58.9
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 1.7e-62 243.4 226 60.2
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 2.2e-62 243.0 226 60.2
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 8.4e-62 241.1 245 57.1
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 8.4e-62 241.1 224 61.2
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.1e-61 240.7 224 58.0
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.4e-61 240.4 224 61.2
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.9e-61 240.0 224 58.5
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 2.4e-61 239.6 224 58.0
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 4.2e-61 238.8 224 58.5
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 7.1e-61 238.0 226 59.7
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 1.2e-60 237.3 225 58.2
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 1.2e-60 237.3 226 60.2
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 1.2e-60 237.3 224 59.4
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 2.1e-60 236.5 224 58.0
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 2.7e-60 236.1 223 57.0
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 2.7e-60 236.1 226 59.3
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 7.9e-60 234.6 224 58.9
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 1.0e-59 234.2 224 58.0
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 5.1e-59 231.9 224 56.7
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 6.7e-59 231.5 224 57.6
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 8.7e-59 231.1 224 58.9
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 1.5e-58 230.3 225 57.8
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 1.5e-58 230.3 224 57.1
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 1.9e-58 229.9 225 59.6
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 1.9e-58 229.9 225 58.7
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.9e-58 229.9 226 58.8
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 9.6e-58 227.6 225 58.7
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 1.6e-57 226.9 224 56.7
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 2.8e-57 226.1 228 55.7
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 2.8e-57 226.1 224 54.9
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 4.8e-57 225.3 224 58.5
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 6.2e-57 224.9 224 55.4
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 1.1e-56 224.2 228 55.7
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 2.4e-56 223.0 225 56.0
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 3.1e-56 222.6 260 53.5
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 3.4e-55 219.2 224 56.7
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 4.5e-55 218.8 224 57.6
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 1.7e-54 216.9 224 55.8
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.9e-54 216.1 238 56.7
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 4.9e-54 215.3 166 72.9
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.1e-53 214.2 224 54.9
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 3.2e-53 212.6 212 55.7
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 7.9e-52 208.0 224 54.0
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 5.1e-51 205.3 224 53.6
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 1.5e-50 203.8 158 66.5
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 2.1e-49 199.9 224 49.6
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 1.1e-48 197.6 225 50.7
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 9.0e-48 194.5 226 51.8
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 5.8e-47 191.8 224 49.6
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 4.9e-46 188.7 165 60.6
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 3.2e-45 186.0 225 48.4
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 9.3e-45 184.5 224 47.8
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 5.7e-42 175.3 237 45.6
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 1.6e-41 173.7 237 45.1
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 6.3e-41 171.8 230 45.2
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 8.2e-41 171.4 250 43.6
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 8.2e-41 171.4 224 46.4
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 4.1e-40 169.1 228 43.9
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 9.0e-40 167.9 231 44.2
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.6e-39 166.4 205 47.8
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.1e-37 161.0 216 43.1
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 5.7e-34 148.7 218 42.2
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 1.3e-33 147.5 162 52.5
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 3.6e-28 129.4 91 71.4
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 1.0e-27 127.9 138 58.7
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 1.4e-27 127.5 89 67.4
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.4e-27 127.5 194 45.4
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 1.8e-27 127.1 106 61.3
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.1e-26 124.4 118 60.2
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 5.9e-23 112.1 75 81.3
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 5.9e-23 112.1 277 29.2
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 4.2e-21 105.9 107 57.9
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.1e-16 91.3 89 55.1
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 1.4e-16 90.9 89 53.9
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 1.4e-16 90.9 60 78.3
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 3.1e-16 89.7 89 53.9
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 4.1e-16 89.4 82 64.6
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 4.1e-16 89.4 82 64.6
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 5.3e-16 89.0 74 66.2
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 7.0e-16 88.6 89 53.9
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 9.1e-16 88.2 222 31.1
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 2.0e-15 87.0 196 33.7
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 8.5e-14 81.6 92 54.3
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.2e-13 79.7 57 71.9
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 4.7e-12 75.9 267 27.0
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 4.0e-11 72.8 77 49.4
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 3.3e-10 69.7 47 72.3
SGA_v2.0_scaffold100G29569 Striga asiatica HOM05D005809 ORTHO05D007259 2.4e-08 63.5 89 42.7


User provided reference genes

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