Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0015400 Rhododendron simsii HOM05D041550 ORTHO05D010278 6.3e-74 282.0 340 100.0
Rhsim01G0015600 Rhododendron simsii HOM05D000318 ORTHO05D010278 4.2e-54 216.1 120 97.5
Rhsim01G0015300 Rhododendron simsii HOM05D000318 ORTHO05D010278 1.3e-50 204.5 121 91.7
vmacro13064 Vaccinium macrocarpon HOM05D000318 ORTHO05D010278 1.3e-50 204.5 121 91.7
Actinidia24765 Actinidia chinensis HOM05D000318 ORTHO05D010278 3.6e-37 159.8 121 71.9
Dinv42792 Davidia involucrata HOM05D000318 ORTHO05D010278 1.1e-33 148.3 121 66.9
Dinv43309 Davidia involucrata HOM05D000318 ORTHO05D010278 1.1e-33 148.3 121 66.9
Dinv41313 Davidia involucrata HOM05D000318 ORTHO05D010278 1.4e-33 147.9 121 66.9
Lj7C466T1 Lonicera japonica HOM05D000318 ORTHO05D010278 2.7e-32 143.7 118 62.7
CSS0040294 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D010278 7.2e-30 135.6 121 62.0
CSS0009408 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D010278 1.2e-29 134.8 121 62.0
Cfa012908 Carpinus fangiana HOM05D000318 ORTHO05D010278 8.9e-28 128.6 119 56.3
TAR626G0402 Trochodendron aralioides HOM05D000318 ORTHO05D010278 2.0e-27 127.5 126 54.8
TAR684G0005 Trochodendron aralioides HOM05D000318 ORTHO05D010278 4.4e-27 126.3 126 54.0
Haze_21266 Corylus avellana HOM05D000318 ORTHO05D010278 3.7e-26 123.2 118 55.9
Atru.chr7.450 Acer truncatum HOM05D000318 ORTHO05D010278 4.9e-26 122.9 118 57.6
Cc06_g14130 Coffea canephora HOM05D000318 ORTHO05D010278 4.9e-26 122.9 121 57.9
Lj9P727T16 Lonicera japonica HOM05D000318 ORTHO05D010278 1.1e-25 121.7 128 53.9
TWI63G0480 Tripterygium wilfordii HOM05D000318 ORTHO05D010278 7.8e-24 115.5 126 50.8
Eucgr.H04837 Eucalyptus grandis HOM05D000318 ORTHO05D010278 1.0e-23 115.2 119 56.3
Ciclev10010558m.g Citrus clementina HOM05D000318 ORTHO05D010278 3.9e-23 113.2 121 51.2
ClCG06G012820 Citrullus lanatus HOM05D000318 ORTHO05D010278 5.0e-23 112.8 118 51.7
Sabra06G0135500 Salix brachista HOM05D000318 ORTHO05D010278 6.6e-23 112.5 126 54.8
Potri.006G178000 Populus trichocarpa HOM05D000318 ORTHO05D010278 8.6e-23 112.1 126 54.8
Potri.018G100000 Populus trichocarpa HOM05D000318 ORTHO05D010278 1.1e-22 111.7 118 53.4
QL02p095379 Quercus lobata HOM05D000318 ORTHO05D010278 9.5e-22 108.6 118 51.7
MELO3C010181.2 Cucumis melo HOM05D000318 ORTHO05D010278 1.2e-21 108.2 118 52.5
Oeu045646.1 Olea europaea HOM05D000318 ORTHO05D010278 3.6e-21 106.7 117 50.4
Manes.14G163800 Manihot esculenta HOM05D000318 ORTHO05D010278 1.4e-20 104.8 118 51.7
Sed0015906 Sechium edule HOM05D000318 ORTHO05D010278 1.4e-20 104.8 118 49.2
CsaV3_1G029380 Cucumis sativus L. HOM05D000318 ORTHO05D010278 1.8e-20 104.4 118 50.0
COL.COLO4_18038 Corchorus olitorius HOM05D000318 ORTHO05D010278 2.3e-20 104.0 123 43.1
Lsat_1_v5_gn_5_87760 Lactuca sativa HOM05D000318 ORTHO05D010278 3.1e-20 103.6 119 50.4
Gohir.A08G235800 Gossypium hirsutum HOM05D000318 ORTHO05D010278 5.2e-20 102.8 116 47.4
PGR142G0184 Punica granatum HOM05D000318 ORTHO05D010278 6.8e-20 102.4 121 45.5
Sed0007184 Sechium edule HOM05D000318 ORTHO05D010278 8.9e-20 102.1 118 48.3
Gohir.A08G093000 Gossypium hirsutum HOM05D000318 ORTHO05D010278 1.5e-19 101.3 116 47.4
Cpa.g.sc127.46 Carica papaya HOM05D000318 ORTHO05D010278 2.6e-19 100.5 99 49.5
Gohir.D08G097900 Gossypium hirsutum HOM05D000318 ORTHO05D010278 2.6e-19 100.5 116 47.4
Gorai.004G105000 Gossypium raimondii HOM05D000318 ORTHO05D010278 2.6e-19 100.5 116 47.4
MBI15_g07475_MAGBIO Magnolia biondii HOM05D000318 ORTHO05D010278 3.4e-19 100.1 121 41.3
Gohir.D08G256200 Gossypium hirsutum HOM05D000318 ORTHO05D010278 4.4e-19 99.8 117 47.0
Gorai.004G273400 Gossypium raimondii HOM05D000318 ORTHO05D010278 4.4e-19 99.8 117 47.0
Thecc.09G158900 Theobroma cacao HOM05D000318 ORTHO05D010278 9.8e-19 98.6 117 48.7
Duzib168G0425 Durio zibethinus HOM05D000318 ORTHO05D010278 1.3e-18 98.2 117 47.9
BcaC04g19925 Brassica carinata HOM05D000318 ORTHO05D010278 6.0e-16 89.4 121 40.5
BcaB08g36148 Brassica carinata HOM05D000318 ORTHO05D010278 1.3e-15 88.2 121 38.0
A10p15190 Brassica napus HOM05D000318 ORTHO05D010278 1.7e-15 87.8 121 39.7
C09p49710 Brassica napus HOM05D000318 ORTHO05D010278 1.7e-15 87.8 121 39.7
BraA10t43602Z Brassica rapa HOM05D000318 ORTHO05D010278 1.7e-15 87.8 121 39.7
AL8G33850 Arabidopsis lyrata HOM05D000318 ORTHO05D010278 3.9e-15 86.7 121 38.8
Sp6g19490 Schrenkiella parvula HOM05D000318 ORTHO05D010278 3.9e-15 86.7 121 38.8
BolC9t57822H Brassica oleracea HOM05D000318 ORTHO05D010278 5.0e-15 86.3 121 39.7
Carub.0008s1833 Capsella rubella HOM05D000318 ORTHO05D010278 5.0e-15 86.3 121 38.8
CARHR271550 Cardamine hirsuta HOM05D000318 ORTHO05D010278 1.5e-14 84.7 121 38.0
Thhalv10015322m.g Eutrema salsugineum HOM05D000318 ORTHO05D010278 1.5e-14 84.7 121 38.8
AT5G57810 Arabidopsis thaliana HOM05D000318 ORTHO05D010278 3.3e-14 83.6 122 38.5
Aa31LG3G13640 Aethionema arabicum HOM05D000318 ORTHO05D010278 1.4e-12 78.2 101 38.6
DCAR_017936 Daucus carota HOM05D000318 ORTHO05D010278 3.1e-12 77.0 121 36.4
unitig_37.g12686 Utricularia gibba HOM05D000318 ORTHO05D010278 5.2e-12 76.3 120 35.0
BcaB05g22376 Brassica carinata HOM05D000318 ORTHO05D010278 1.3e-10 71.6 121 33.9
C02p13830 Brassica napus HOM05D000318 ORTHO05D010278 1.3e-10 71.6 121 33.9
BolC2t07502H Brassica oleracea HOM05D000318 ORTHO05D010278 1.3e-10 71.6 121 33.9
BraA02t05892Z Brassica rapa HOM05D000318 ORTHO05D010278 1.3e-10 71.6 121 33.9
A02p08180 Brassica napus HOM05D000318 ORTHO05D010278 1.7e-10 71.2 121 33.1
THA.LOC104811827 Tarenaya hassleriana HOM05D000318 ORTHO05D010278 8.3e-10 68.9 122 33.6
Rhsim01G0015500 Rhododendron simsii HOM05D041550 ORTHO05D339677 3.2e-09 67.0 38 100.0
COL.COLO4_04274 Corchorus olitorius HOM05D000318 ORTHO05D010278 1.2e-08 65.1 74 40.5
Rhsim01G0015700 Rhododendron simsii HOM05D041550 ORTHO05D339639 1.2e-08 65.1 38 97.4
DCAR_014724 Daucus carota HOM05D000318 ORTHO05D010278 2.7e-08 63.9 120 30.8


User provided reference genes

Program Settings