Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 0.0e+00 1298.5 638 100.0
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 1.8e-300 1035.4 749 73.8
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 5.5e-297 1023.8 644 81.4
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 1.2e-288 996.1 650 78.8
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 1.2e-288 996.1 650 78.8
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.6e-288 995.7 652 78.8
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 1.3e-285 986.1 647 77.0
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 3.8e-282 974.5 640 76.4
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 3.8e-282 974.5 603 80.9
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 4.2e-281 971.1 652 75.5
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 1.2e-280 969.5 668 74.3
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 2.1e-280 968.8 650 75.5
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 3.0e-279 964.9 650 75.7
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 3.3e-278 961.4 650 75.2
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 2.8e-277 958.4 604 79.1
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 1.4e-276 956.1 617 76.8
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.1e-276 954.9 679 72.6
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 4.5e-275 951.0 649 75.2
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 5.9e-275 950.7 644 75.0
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 3.8e-274 948.0 647 74.7
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 6.5e-274 947.2 657 74.3
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 6.5e-274 947.2 629 75.5
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.5e-273 945.3 601 77.9
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 1.2e-272 943.0 613 76.7
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 4.7e-272 941.0 637 74.3
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.0e-271 939.9 663 72.4
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 3.0e-271 938.3 613 77.0
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 6.7e-271 937.2 647 72.3
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 8.8e-271 936.8 666 72.8
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 7.4e-270 933.7 613 76.2
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 7.4e-270 933.7 631 74.6
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 2.2e-269 932.2 604 77.0
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 8.2e-269 930.2 665 72.3
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 2.4e-268 928.7 604 76.5
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 4.1e-268 927.9 612 76.6
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 4.1e-268 927.9 655 72.2
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 5.3e-268 927.5 612 76.6
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 5.3e-268 927.5 641 73.5
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 5.3e-268 927.5 645 72.9
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 5.3e-268 927.5 648 73.3
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 9.1e-268 926.8 612 76.5
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 1.6e-267 926.0 613 74.7
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 2.0e-267 925.6 612 76.5
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 2.6e-267 925.2 645 72.7
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 4.5e-267 924.5 617 74.9
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 7.7e-267 923.7 617 74.7
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 7.7e-267 923.7 617 74.7
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 1.0e-266 923.3 618 74.8
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 1.3e-266 922.9 675 70.1
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.2e-266 922.2 664 72.3
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 6.5e-266 920.6 656 71.6
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 2.5e-265 918.7 622 74.9
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 5.5e-265 917.5 649 72.6
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 9.4e-265 916.8 648 72.2
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 3.6e-264 914.8 606 75.2
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 2.3e-263 912.1 653 72.0
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 2.8e-261 905.2 617 73.7
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 2.4e-260 902.1 651 71.6
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 4.1e-260 901.4 605 76.2
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 1.2e-259 899.8 617 72.9
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 2.2e-258 895.6 718 63.5
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 1.5e-257 892.9 627 71.0
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 1.5e-257 892.9 599 74.5
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 5.5e-257 891.0 624 73.1
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 2.1e-256 889.0 613 73.9
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 2.7e-256 888.6 639 72.1
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.4e-255 886.3 605 73.6
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.3e-255 885.6 604 75.3
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 2.6e-254 882.1 637 69.9
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.7e-253 879.4 605 72.2
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 3.7e-253 878.2 631 69.6
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 4.8e-253 877.9 651 70.2
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 1.1e-252 876.7 512 83.4
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 4.1e-252 874.8 626 72.4
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 7.0e-252 874.0 598 74.4
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 2.7e-251 872.1 628 72.5
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 3.5e-251 871.7 630 70.5
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.7e-250 869.4 608 72.7
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 8.6e-250 867.1 602 73.6
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 8.6e-250 867.1 602 73.3
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 5.5e-249 864.4 662 69.0
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 3.4e-246 855.1 613 71.0
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 2.4e-244 849.0 518 81.7
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 4.6e-235 818.1 642 65.9
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 1.3e-234 816.6 581 70.4
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 2.8e-232 808.9 567 72.0
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 4.9e-221 771.5 495 78.4
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 6.4e-221 771.2 617 62.4
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 1.1e-217 760.4 470 79.4
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 5.6e-217 758.1 484 76.7
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 3.1e-215 752.3 602 62.5
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 9.2e-212 740.7 495 74.5
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 2.8e-208 729.2 520 71.5
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 9.9e-198 694.1 473 74.0
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 2.4e-196 689.5 489 71.2
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.6e-184 650.2 630 59.4
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 7.4e-177 624.8 658 53.3
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 1.8e-175 620.2 432 72.9
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 7.4e-169 598.2 564 55.9
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 7.7e-158 561.6 360 76.1
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 2.6e-153 546.6 487 57.1
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 3.8e-141 506.1 382 68.1
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.1e-140 504.6 640 46.6
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 5.4e-135 485.7 346 72.5
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.6e-134 484.2 312 73.4
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 5.9e-126 455.7 273 81.0
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 2.3e-122 443.7 247 84.6
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 8.9e-114 415.2 594 41.9
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 7.5e-113 412.1 269 74.7
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 5.1e-101 372.9 267 73.4
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 1.6e-86 324.7 622 34.1
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 6.6e-85 319.3 216 73.6
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.9e-80 303.9 183 80.9
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 1.9e-68 264.6 194 69.6
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.5e-57 228.4 195 65.6
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 2.3e-53 214.5 124 83.1
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 2.3e-53 214.5 125 82.4
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 7.4e-52 209.5 134 73.9
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 7.2e-47 193.0 128 75.0
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.6e-38 164.1 88 85.2
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 1.8e-34 151.8 570 26.8
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 9.1e-34 149.4 104 67.3
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 3.7e-27 127.5 594 24.6
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 2.2e-24 118.2 629 25.1
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 3.8e-24 117.5 68 83.8
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 3.8e-24 117.5 83 74.7
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 5.0e-24 117.1 64 79.7
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 7.2e-23 113.2 83 73.5
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 7.0e-18 96.7 55 78.2
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 1.7e-16 92.0 67 74.6
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 3.8e-16 90.9 59 76.3
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 3.4e-12 77.8 43 86.0
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 1.3e-11 75.9 50 72.0
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 1.8e-10 72.0 41 82.9
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 2.4e-10 71.6 46 80.4
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 1.0e-08 66.2 43 74.4
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 6.6e-08 63.5 41 70.7
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 1.1e-07 62.8 43 72.1
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.6e-06 58.9 28 96.4


User provided reference genes

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