Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.8e-221 773.5 877 100.0
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 7.1e-162 575.5 894 85.8
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 3.4e-140 503.4 875 81.8
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 3.0e-136 490.3 873 82.6
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.8e-132 476.1 846 74.5
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 8.5e-115 419.1 880 69.3
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 5.1e-104 383.3 872 75.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 5.1e-104 383.3 879 76.8
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 2.6e-100 370.9 869 76.6
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 3.5e-100 370.5 865 77.2
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 6.5e-99 366.3 870 73.9
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 2.7e-97 360.9 875 73.8
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 4.0e-96 357.1 871 73.9
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 8.8e-96 355.9 878 76.2
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 1.3e-94 352.1 872 70.2
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 7.0e-93 346.3 868 76.6
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 2.7e-92 344.4 873 69.6
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 4.5e-92 343.6 873 77.3
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 3.8e-91 340.5 874 75.1
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 6.5e-91 339.7 869 75.7
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 1.8e-88 331.6 871 75.7
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 3.4e-87 327.4 868 76.5
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.4e-85 322.0 875 74.7
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.4e-85 322.0 866 74.7
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 3.1e-85 320.9 879 72.7
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 7.0e-85 319.7 878 73.9
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.2e-84 318.9 878 73.6
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 4.5e-84 317.0 879 69.4
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.7e-83 315.1 870 71.5
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 5.0e-83 313.5 879 68.7
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.1e-82 312.4 877 70.9
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.5e-82 312.0 871 71.3
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 3.2e-82 310.8 867 74.2
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 5.5e-82 310.1 870 74.5
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.1e-81 308.1 869 74.3
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.1e-81 308.1 869 74.3
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 4.7e-81 307.0 874 75.7
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.0e-80 305.8 885 60.9
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.6e-79 301.2 869 74.0
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 2.6e-79 301.2 870 73.3
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 4.4e-79 300.4 879 66.3
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 5.7e-79 300.1 880 66.1
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 2.2e-78 298.1 871 74.1
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.4e-77 295.4 877 70.8
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.7e-76 291.2 834 76.3
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 7.7e-76 289.7 874 73.3
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.7e-75 288.5 874 63.8
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 2.9e-75 287.7 886 73.0
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 8.6e-75 286.2 888 61.5
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.6e-73 282.0 874 64.2
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.1e-73 281.6 874 65.1
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 2.1e-73 281.6 874 65.1
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 2.1e-73 281.6 363 76.6
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 3.6e-73 280.8 874 72.1
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 1.4e-72 278.9 870 72.0
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 4.0e-72 277.3 857 69.5
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 5.2e-72 276.9 838 71.6
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 8.9e-72 276.2 363 76.6
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.2e-71 275.8 834 75.4
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.0e-71 275.0 869 70.8
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 9.8e-71 272.7 869 71.9
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.3e-70 272.3 441 61.0
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 1.3e-70 272.3 871 69.9
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 4.9e-70 270.4 874 70.9
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 8.3e-70 269.6 871 64.6
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 1.8e-69 268.5 879 67.5
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 2.4e-69 268.1 377 70.0
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 3.2e-69 267.7 199 65.3
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 5.4e-69 266.9 879 63.5
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 2.7e-68 264.6 867 73.1
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 3.3e-66 257.7 874 70.4
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 4.3e-66 257.3 868 71.5
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.2e-65 255.8 874 70.5
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.8e-65 254.6 874 70.3
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 8.9e-64 249.6 874 70.7
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 2.0e-63 248.4 871 71.2
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 4.9e-62 243.8 870 70.7
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 6.4e-62 243.4 869 70.2
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.9e-61 241.9 801 75.2
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 9.2e-61 239.6 379 69.1
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 1.5e-55 222.2 880 68.0
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 1.3e-54 219.2 883 64.3
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 2.9e-54 218.0 860 68.3
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.7e-54 217.6 360 67.8
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 1.9e-53 215.3 376 66.8
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 2.4e-53 214.9 784 76.3
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 6.6e-51 206.8 836 67.2
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 9.5e-50 203.0 874 68.1
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.6e-49 202.2 180 56.7
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.4e-45 188.3 866 68.8
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 6.6e-43 180.3 886 51.8
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 4.0e-40 171.0 874 57.9
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 2.0e-39 168.7 386 60.4
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.7e-38 165.6 388 59.5
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.4e-37 162.5 185 47.0
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 5.1e-35 154.1 169 47.9
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.4e-32 146.0 176 50.6
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 6.4e-30 137.1 376 57.4
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 1.4e-29 136.0 197 40.6
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 2.1e-25 122.1 392 54.6
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 1.1e-24 119.8 150 40.7
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.2e-23 116.3 144 43.8
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.1e-21 109.8 102 53.9
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 1.9e-21 109.0 106 52.8
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 2.7e-20 105.1 320 61.2
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.8e-11 75.9 112 42.0
VMungo1127G1215 Vigna mungo HOM05D007402 ORTHO05D003673 1.5e-07 62.8 167 26.9
Gohir.A08G008400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 4.5e-07 61.2 165 24.8
Phvul.011G073100 Phaseolus vulgaris HOM05D007402 ORTHO05D003673 4.5e-07 61.2 174 25.3
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 2.2e-06 58.9 66 43.9
CDE08G0187 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 3.8e-06 58.2 43 62.8
Glyma.12G071400 Glycine max HOM05D007402 ORTHO05D003673 6.5e-06 57.4 168 25.0


User provided reference genes

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