Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 4.5e-132 474.6 233 100.0
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 1.9e-114 416.0 209 97.1
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 1.9e-114 416.0 209 97.6
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 2.6e-111 405.6 209 94.7
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 1.1e-109 400.2 209 93.8
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 2.0e-108 396.0 209 93.3
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 7.8e-108 394.0 209 91.4
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 1.0e-107 393.7 210 91.4
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 1.3e-107 393.3 209 91.4
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 1.9e-106 389.4 209 89.5
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 2.5e-106 389.0 210 91.0
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 3.3e-106 388.7 209 90.0
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 5.6e-106 387.9 209 89.5
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.6e-105 386.3 209 90.0
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 2.1e-105 386.0 209 90.4
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 2.1e-105 386.0 209 90.0
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 1.0e-104 383.6 209 88.5
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 1.0e-104 383.6 209 89.0
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 1.0e-104 383.6 209 89.5
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.4e-104 383.3 210 90.5
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 2.3e-104 382.5 209 89.5
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 3.0e-104 382.1 229 80.3
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 4.0e-104 381.7 218 83.9
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 5.2e-104 381.3 209 90.4
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 5.2e-104 381.3 209 88.5
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 8.9e-104 380.6 209 89.0
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.2e-103 380.2 209 89.0
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 1.2e-103 380.2 209 89.0
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 1.5e-103 379.8 210 89.5
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.0e-103 379.4 210 89.5
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.6e-103 379.0 210 89.5
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 2.6e-103 379.0 209 88.0
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 4.4e-103 378.3 208 89.4
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 4.4e-103 378.3 209 89.0
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 7.5e-103 377.5 209 87.6
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 7.5e-103 377.5 209 88.0
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.5e-103 377.5 209 89.0
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 7.5e-103 377.5 209 87.1
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 9.8e-103 377.1 209 87.6
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 9.8e-103 377.1 209 85.2
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 1.3e-102 376.7 209 87.1
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 1.3e-102 376.7 210 89.0
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 2.2e-102 375.9 207 89.4
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 2.2e-102 375.9 221 82.4
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 2.2e-102 375.9 209 84.7
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 2.9e-102 375.6 209 87.6
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 2.9e-102 375.6 223 84.8
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.9e-102 375.6 209 88.5
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 2.9e-102 375.6 209 87.6
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 2.9e-102 375.6 210 87.6
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 2.9e-102 375.6 209 87.1
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 3.7e-102 375.2 205 89.8
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 3.7e-102 375.2 209 87.6
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 4.9e-102 374.8 208 86.5
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 6.4e-102 374.4 209 90.0
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 8.3e-102 374.0 209 86.6
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.1e-101 373.6 210 88.6
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.1e-101 373.6 209 87.1
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.4e-101 373.2 209 87.1
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.8e-101 372.9 209 88.0
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 1.8e-101 372.9 209 89.5
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.2e-101 372.1 209 89.5
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 4.1e-101 371.7 209 85.6
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 4.1e-101 371.7 227 79.3
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 7.0e-101 370.9 209 86.1
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 9.2e-101 370.5 209 85.2
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 9.2e-101 370.5 208 86.5
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 9.2e-101 370.5 208 86.5
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 1.2e-100 370.2 209 85.2
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 1.6e-100 369.8 208 86.5
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 1.6e-100 369.8 208 85.6
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 2.0e-100 369.4 209 85.2
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 2.7e-100 369.0 208 86.1
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 2.7e-100 369.0 209 86.1
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 2.7e-100 369.0 209 85.6
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 3.5e-100 368.6 209 86.1
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 4.6e-100 368.2 206 86.9
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 4.6e-100 368.2 208 87.5
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 7.8e-100 367.5 208 86.5
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 7.8e-100 367.5 208 86.1
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 1.0e-99 367.1 208 85.6
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 1.0e-99 367.1 208 85.6
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 1.0e-99 367.1 208 85.6
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.0e-99 367.1 215 82.8
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 1.0e-99 367.1 208 87.0
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 1.3e-99 366.7 206 86.9
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 2.3e-99 365.9 227 77.5
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 3.9e-99 365.2 229 79.0
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 5.0e-99 364.8 208 86.1
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 1.1e-98 363.6 208 86.5
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 1.5e-98 363.2 207 85.5
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.9e-98 362.8 243 77.4
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 2.5e-98 362.5 212 84.0
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 3.6e-97 358.6 205 86.3
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 3.6e-97 358.6 207 84.5
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 7.5e-95 350.9 203 84.2
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 2.9e-94 349.0 205 82.4
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 6.4e-94 347.8 202 82.7
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 3.2e-93 345.5 206 81.6
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 7.0e-93 344.4 204 81.9
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 2.2e-86 322.8 209 73.7
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 4.1e-85 318.5 209 73.2
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 4.1e-85 318.5 209 72.2
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 2.1e-84 316.2 209 77.0
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 7.8e-84 314.3 211 72.5
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 2.5e-82 309.3 216 74.5
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 2.5e-82 309.3 173 85.0
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 8.1e-81 304.3 208 75.5
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.3e-74 282.0 159 88.1
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 3.4e-71 272.3 209 69.4
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 4.4e-71 271.9 159 83.0
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 1.1e-69 267.3 201 71.1
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 1.4e-69 266.9 227 62.1
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 1.5e-66 256.9 200 63.0
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 6.9e-64 248.1 199 62.3
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 2.6e-63 246.1 204 60.8
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.9e-61 240.0 203 58.1
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 7.1e-61 238.0 206 58.3
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 1.2e-60 237.3 206 57.3
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 1.2e-60 237.3 206 57.8
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 3.0e-59 232.6 206 55.3
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.5e-58 230.3 208 54.8
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 1.9e-58 229.9 206 56.3
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 3.3e-58 229.2 219 53.0
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 4.3e-58 228.8 206 54.9
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 3.1e-56 222.6 125 84.8
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 1.2e-52 210.7 206 52.9
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 1.2e-52 210.7 206 52.9
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-52 210.7 206 52.9
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 2.3e-51 206.5 206 50.5
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.1e-51 205.3 137 73.7
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 2.4e-48 196.4 167 56.9
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 1.5e-47 193.7 118 78.8
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 9.3e-45 184.5 205 48.3
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 2.5e-42 176.4 132 59.8
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 1.1e-40 171.0 94 86.2
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 1.0e-38 164.5 161 52.2
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 1.9e-34 150.2 81 87.7
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 9.7e-34 147.9 94 73.4
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 1.8e-32 143.7 206 39.8
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.5e-31 140.6 209 40.7
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.5e-31 140.6 206 41.3
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.9e-30 136.3 82 80.5
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 1.4e-29 134.0 116 56.9
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 2.3e-27 126.7 88 73.9
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.7e-26 122.1 187 39.6
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 3.4e-23 112.8 61 90.2
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 1.7e-22 110.5 92 63.0
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 1.7e-22 110.5 92 63.0
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 1.7e-22 110.5 92 63.0
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 8.5e-22 108.2 224 36.6
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 1.0e-19 101.3 51 92.2
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 1.1e-18 97.8 93 60.2
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 2.0e-18 97.1 94 59.6
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 2.6e-18 96.7 92 60.9
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 2.6e-18 96.7 81 61.7
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.6e-15 86.7 120 39.2
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 7.7e-15 85.1 46 84.8
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.4e-08 64.3 98 35.7
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.6e-07 60.8 149 33.6
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.5e-07 59.3 73 42.5
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.5e-07 59.3 77 39.0
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.0e-06 58.2 84 34.5
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.3e-06 57.8 77 39.0
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.7e-06 57.4 73 39.7


User provided reference genes

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