Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 3.1e-44 181.4 92 100.0
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 8.5e-26 120.2 80 75.0
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 4.7e-24 114.4 97 63.9
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 4.5e-19 97.8 79 60.8
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 1.7e-18 95.9 78 61.5
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.7e-18 95.9 81 59.3
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 9.5e-17 90.1 75 61.3
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 9.5e-17 90.1 75 61.3
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 9.5e-17 90.1 75 61.3
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 9.5e-17 90.1 74 60.8
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 9.5e-17 90.1 74 60.8
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 1.6e-16 89.4 74 59.5
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 4.7e-16 87.8 74 58.1
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 4.7e-16 87.8 74 58.1
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 4.7e-16 87.8 74 58.1
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 4.7e-16 87.8 74 58.1
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 6.1e-16 87.4 80 56.2
FAN22G2261 Fragaria x ananassa HOM05D008283 ORTHO05D009928 1.4e-15 86.3 81 54.3
PGR028G0007 Punica granatum HOM05D008283 ORTHO05D009928 1.8e-15 85.9 77 59.7
Gohir.A11G200616 Gossypium hirsutum HOM05D008283 ORTHO05D009928 2.0e-14 82.4 65 61.5
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 2.0e-14 82.4 92 46.7
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 2.0e-14 82.4 92 46.7
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.6e-14 82.0 72 55.6
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 3.4e-14 81.6 73 57.5
FAN09G4124 Fragaria x ananassa HOM05D000160 ORTHO05D000914 3.4e-14 81.6 63 61.9
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 5.7e-14 80.9 80 51.2
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 5.7e-14 80.9 80 51.2
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 5.7e-14 80.9 80 51.2
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 5.7e-14 80.9 80 51.2
Medtr1g041535 Medicago truncatula HOM05D008283 ORTHO05D009928 7.5e-14 80.5 72 56.9
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 9.8e-14 80.1 77 49.4
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 1.3e-13 79.7 80 50.0
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 6.3e-13 77.4 76 50.0
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 6.3e-13 77.4 76 50.0
TPR.G935 Trifolium pratense HOM05D008283 ORTHO05D009928 1.1e-12 76.6 74 55.4
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.1e-12 75.1 77 49.4
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.1e-12 75.1 68 54.4
Nitab4.5_0002418g0110 Nicotiana tabacum HOM05D008283 ORTHO05D009928 4.1e-12 74.7 70 55.7
AT2G07820 Arabidopsis thaliana HOM05D008283 ORTHO05D009928 5.4e-12 74.3 73 53.4
Ca_17166_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 7.0e-12 73.9 77 50.6
Ca_30751_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 7.0e-12 73.9 77 50.6
Ah.10g028250 Amaranthus hybridus HOM05D008283 ORTHO05D009928 9.2e-12 73.6 71 50.7
Ah.10g028800 Amaranthus hybridus HOM05D008283 ORTHO05D009928 9.2e-12 73.6 71 50.7
AUR62042329 Chenopodium quinoa HOM05D008283 ORTHO05D009928 9.2e-12 73.6 71 50.7
Hma1.2p1_0904F.1_g235230 Hydrangea macrophylla HOM05D008283 ORTHO05D009928 1.2e-11 73.2 60 60.0
Potri.007G061701 Populus trichocarpa HOM05D008283 ORTHO05D009928 3.5e-11 71.6 44 79.5
SabraMtG0004000 Salix brachista HOM05D008283 ORTHO05D009928 3.5e-11 71.6 44 79.5
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 4.5e-11 71.2 71 50.7
Nitab4.5_0000664g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.9e-11 70.9 71 53.5
Nitab4.5_0000362g0080 Nicotiana tabacum HOM05D008283 ORTHO05D009928 7.8e-11 70.5 68 55.9
AUR62002477 Chenopodium quinoa HOM05D008283 ORTHO05D009928 6.6e-10 67.4 71 47.9
BraSC159t45721Z Brassica rapa HOM05D008283 ORTHO05D009928 1.9e-09 65.9 47 68.1
unitig_87.g27963 Utricularia gibba HOM05D008283 ORTHO05D009928 1.9e-09 65.9 66 50.0
Nitab4.5_0000172g0940 Nicotiana tabacum HOM05D008283 ORTHO05D009928 9.5e-09 63.5 67 49.3
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 2.1e-08 62.4 82 37.8
PGSC0003DMG400017853 Solanum tuberosum HOM05D008283 ORTHO05D009928 2.8e-08 62.0 71 45.1
COL.COLO4_35489 Corchorus olitorius HOM05D008283 ORTHO05D009928 3.6e-08 61.6 78 38.5
Thhalv10001273m.g Eutrema salsugineum HOM05D008283 ORTHO05D009928 4.0e-07 58.2 86 38.4
Nitab4.5_0007800g0030 Nicotiana tabacum HOM05D008283 ORTHO05D009928 8.9e-07 57.0 43 58.1
Nitab4.5_0001985g0050 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.5e-06 56.2 43 58.1
Solyc00g210860.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.5e-06 56.2 80 37.5
Solyc08g036550.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 2.0e-06 55.8 80 37.5
ATR0273G001 Amborella trichopoda HOM05D017454 ORTHO05D009928 3.4e-06 55.1 80 37.5
Nitab4.5_0001121g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.7e-06 54.3 65 44.6


User provided reference genes

Program Settings