Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 7.2e-89 330.5 160 100.0
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 7.2e-89 330.5 160 100.0
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 9.5e-81 303.5 160 91.9
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 1.6e-80 302.8 160 91.9
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 3.6e-80 301.6 158 92.4
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 1.0e-79 300.1 160 91.2
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 1.4e-79 299.7 160 91.2
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 2.2e-77 292.4 160 89.4
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 2.8e-77 292.0 160 88.8
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.1e-76 290.0 157 89.8
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 1.2e-75 286.6 158 87.3
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 1.6e-75 286.2 158 87.3
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 4.5e-75 284.6 160 87.5
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 1.0e-74 283.5 160 86.2
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 2.9e-74 282.0 160 86.2
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 6.6e-74 280.8 149 91.3
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 1.5e-73 279.6 160 86.2
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 4.3e-73 278.1 160 83.8
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 1.6e-72 276.2 158 85.4
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 3.7e-69 265.0 158 81.6
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 4.1e-68 261.5 159 82.4
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 1.2e-67 260.0 157 82.2
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 4.3e-65 251.5 160 80.0
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 8.0e-64 247.3 159 78.0
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 8.0e-64 247.3 159 78.0
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 8.0e-64 247.3 159 78.0
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 2.3e-63 245.7 159 77.4
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 2.3e-63 245.7 159 77.4
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 4.4e-62 241.5 159 76.1
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 2.9e-61 238.8 160 76.9
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 2.1e-59 232.6 159 74.2
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 1.0e-58 230.3 158 74.1
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.6e-58 227.6 157 73.9
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 3.4e-54 215.3 126 84.1
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 4.9e-53 211.5 142 76.1
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 2.1e-51 206.1 101 97.0
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 2.7e-51 205.7 124 81.5
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.7e-50 203.0 145 75.2
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 5.8e-46 188.0 128 75.0
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 7.6e-46 187.6 102 88.2
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 1.0e-42 177.2 119 75.6
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 6.6e-42 174.5 114 75.4
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 5.8e-38 161.4 88 86.4
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 2.7e-35 152.5 88 83.0
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.5e-33 146.0 97 73.2
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 9.0e-31 137.5 71 90.1
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 9.0e-31 137.5 113 64.6
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.2e-30 137.1 87 75.9
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 1.5e-30 136.7 79 81.0
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 5.4e-28 128.3 83 72.3
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 5.4e-28 128.3 83 72.3
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.6e-27 126.7 80 77.5
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 3.5e-27 125.6 74 82.4
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 2.5e-25 119.4 62 90.3
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 1.3e-24 117.1 83 67.5
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 2.5e-20 102.8 60 85.0
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 3.5e-19 99.0 71 67.6
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 4.6e-19 98.6 72 70.8
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 5.1e-18 95.1 61 75.4
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 1.9e-17 93.2 64 73.4
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.2e-16 87.8 59 74.6
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.1e-15 87.4 58 75.9
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 2.0e-14 83.2 44 86.4
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 3.4e-14 82.4 74 62.2
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 2.2e-13 79.7 49 75.5
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.9e-10 68.9 45 75.6
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 3.9e-10 68.9 59 61.0
Lalb_Chr00c24g0406881 Lupinus albus HOM05D002965 ORTHO05D010536 7.7e-06 54.7 25 96.0


User provided reference genes

Program Settings